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Cofit
Top cofit genes for b4644 from
Escherichia coli BW25113
ypjI
: no description
Rank
Hit
Name
Description
Conserved?
Cofitness
1
b2945
endA
DNA-specific endonuclease I (NCBI)
no
0.22
2
b1914
uvrY
response regulator (NCBI)
no
0.20
3
b2794
yqcD
hypothetical protein (NCBI)
no
0.20
4
b1685
ydiH
predicted protein (RefSeq)
no
0.18
5
b0058
rluA
pseudouridine synthase for 23S rRNA (position 746) and tRNAphe(position 32) (NCBI)
no
0.18
6
b0611
rna
ribonuclease I (NCBI)
no
0.18
7
b3181
greA
transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS)
no
0.18
8
b2617
smpA
small membrane protein A (VIMSS)
no
0.17
9
b2494
yfgC
predicted peptidase (NCBI)
no
0.17
10
b2060
b2060
orf, hypothetical protein (VIMSS)
no
0.17
11
b4135
yjdC
orf, hypothetical protein (VIMSS)
no
0.17
12
b0565
ompT
DLP12 prophage; outer membrane protease VII (outer membrane protein 3b) (NCBI)
no
0.17
13
b3225
nanA
N-acetylneuraminate lyase (NCBI)
no
0.17
14
b0053
surA
peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI)
no
0.17
15
b2006
yeeW
CP4-44 prophage; predicted protein (RefSeq)
no
0.17
16
b4608
ryfC
Novel sRNA, function unknown (RefSeq)
no
0.17
17
b2035
wbbH
O-antigen polymerase (NCBI)
no
0.16
18
b1824
yobF
hypothetical protein (NCBI)
no
0.16
19
b1311
ycjO
predicted sugar transporter subunit: membrane component of ABC superfamily (NCBI)
no
0.16
20
b2630
yfjN
CP4-57 prophage; RNase LS (NCBI)
no
0.16
Or look for
negative cofitness