Top cofit genes for b4557 from Escherichia coli BW25113

yidD: hypothetical protein (NCBI)
SEED: Protein YidD
KEGG: hypothetical protein

Rank	Hit	Name	Description	Conserved?	Cofitness
1	b4175	hflC	modulator for HflB protease specific for phage lambda cII repressor (NCBI)	0.54	0.41
2	b3611	yibN	predicted rhodanese-related sulfurtransferase (NCBI)	0.66	0.40
3	b3932	hslV	ATP-dependent protease peptidase subunit (NCBI)	0.59	0.40
4	b4174	hflK	modulator for HflB protease specific for phage lambda cII repressor (NCBI)	0.55	0.39
5	b0407	yajC	preprotein translocase subunit YajC (NCBI)	0.67	0.39
6	b2952	yggT	predicted inner membrane protein (NCBI)	0.69	0.38
7	b3037	ygiB	conserved outer membrane protein (RefSeq)	no	0.37
8	b3038	ygiC	predicted enzyme (NCBI)	no	0.37
9	b3226	yhcK	putative FADA-type transcriptional regulator (VIMSS)	no	0.37
10	b3931	hslU	ATP-dependent protease ATP-binding subunit (NCBI)	0.68	0.36
11	b4140	b4140	orf, hypothetical protein (VIMSS)	0.40	0.36
12	b0441	ppiD	peptidyl-prolyl cis-trans isomerase (rotamase D) (NCBI)	0.54	0.35
13	b1255	yciC	hypothetical protein (NCBI)	no	0.35
14	b3466	yhhL	conserved inner membrane protein (NCBI)	no	0.34
15	b3379	php	predicted hydrolase (NCBI)	no	0.34
16	b3381	yhfX	predicted amino acid racemase (NCBI)	no	0.33
17	b3383	yhfZ	hypothetical protein (NCBI)	no	0.33
18	b0970	yccA	inner membrane protein (NCBI)	0.70	0.32
19	b2796	sdaC	predicted serine transporter (NCBI)	no	0.32
20	b3912	cpxR	DNA-binding response regulator in two-component regulatory system with CpxA (NCBI)	no	0.32

Or look for negative cofitness