Top cofit genes for b4389 from Escherichia coli BW25113

radA: predicted repair protein (NCBI)
SEED: DNA repair protein RadA
KEGG: DNA repair protein RadA/Sms

Rank	Hit	Name	Description	Conserved?	Cofitness
1	b2184	yejH	DNA damage response helicase (yejH or radD) (from data)	0.73	0.68
2	b2616	recN	recombination and repair protein (NCBI)	0.93	0.55
3	b0472	recR	recombination protein RecR (NCBI)	0.78	0.55
4	b2565	recO	DNA repair protein RecO (NCBI)	0.80	0.54
5	b3700	recF	recombination protein F (NCBI)	0.83	0.54
6	b3813	uvrD	DNA-dependent ATPase I and helicase II (NCBI)	0.91	0.53
7	b0779	uvrB	excinuclease ABC subunit B (NCBI)	0.92	0.52
8	b1913	uvrC	excinuclease ABC, subunit C; repair of UV damage to DNA (VIMSS)	0.91	0.49
9	b1184	umuC	DNA polymerase V subunit UmuC (NCBI)	0.47	0.48
10	b2509	xseA	exodeoxyribonuclease VII large subunit (NCBI)	0.82	0.47
11	b3660	yicL	predicted inner membrane protein (NCBI)	no	0.45
12	b4058	uvrA	excinuclease ABC subunit A (NCBI)	0.94	0.45
13	b0060	polB	DNA polymerase II (NCBI)	0.88	0.45
14	b0577	ybdG	predicted mechanosensitive channel (NCBI)	0.27	0.44
15	b0799	dinG	ATP-dependent DNA helicase (NCBI)	0.84	0.39
16	b1114	mfd	transcription-repair coupling factor (NCBI)	0.78	0.36
17	b0959	yccR	hypothetical protein (NCBI)	no	0.35
18	b2892	recJ	ssDNA exonuclease, 5' --> 3'-specific (NCBI)	0.82	0.35
19	b1653	lhr	predicted ATP-dependent helicase (NCBI)	0.47	0.32
20	b3651	trmH	tRNA (Guanosine-2'-O-)-methyltransferase (NCBI)	0.58	0.31

Or look for negative cofitness