Top cofit genes for b4317 from Escherichia coli BW25113

fimD: outer membrane usher protein, type 1 fimbrial synthesis (NCBI)
SEED: type 1 fimbriae anchoring protein FimD
KEGG: outer membrane usher protein

Rank	Hit	Name	Description	Conserved?	Cofitness
1	b4312	fimB	tyrosine recombinase/inversion of on/off regulator of fimA (NCBI)	0.92	0.80
2	b4316	fimC	periplasmic chaperone, required for type 1 fimbriae (VIMSS)	0.85	0.79
3	b4314	fimA	major type 1 subunit fimbrin (pilin) (NCBI)	0.93	0.78
4	b4320	fimH	minor component of type 1 fimbriae (NCBI)	0.95	0.37
5	b3105	yhaJ	predicted DNA-binding transcriptional regulator (NCBI)	0.72	0.29
6	b0545	ybcL	DLP12 prophage; predicted kinase inhibitor (NCBI)	no	0.29
7	b0461	ybaJ	hypothetical protein (NCBI)	0.35	0.28
8	b1642	slyA	transcriptional regulator for cryptic hemolysin (VIMSS)	0.30	0.28
9	b3226	yhcK	putative FADA-type transcriptional regulator (VIMSS)	0.52	0.28
10	b4452	gadY	unknown RNA (NCBI)	no	0.27
11	b0459	maa	maltose O-acetyltransferase (NCBI)	no	0.26
12	b4315	fimI	fimbrial protein (VIMSS)	0.87	0.25
13	b2039	rfbA	glucose-1-phosphate thymidylyltransferase (NCBI)	no	0.24
14	b3347	fkpA	FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) (NCBI)	0.21	0.23
15	b4319	fimG	minor component of type 1 fimbriae (NCBI)	0.71	0.23
16	b0019	nhaA	pH-dependent sodium/proton antiporter (NCBI)	0.63	0.22
17	b2808	gcvA	DNA-binding transcriptional dual regulator (NCBI)	0.51	0.22
18	b4174	hflK	modulator for HflB protease specific for phage lambda cII repressor (NCBI)	no	0.22
19	b0676	nagC	DNA-binding transcriptional dual regulator, repressor of N-acetylglucosamine (NCBI)	0.37	0.21
20	b2376	ypdI	predicted lipoprotein involved in colanic acid biosynthesis (NCBI)	no	0.21

Or look for negative cofitness