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Cofit
Top cofit genes for b4286 from
Escherichia coli BW25113
yjhV
:
KpLE2 phage-like element; predicted protein (RefSeq)
Rank
Hit
Name
Description
Conserved?
Cofitness
1
b0889
lrp
DNA-binding transcriptional dual regulator, leucine-binding (NCBI)
no
0.30
2
b3828
metR
DNA-binding transcriptional activator, homocysteine-binding (NCBI)
no
0.27
3
b0052
pdxA
4-hydroxythreonine-4-phosphate dehydrogenase (NCBI)
no
0.26
4
b3829
metE
5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase (NCBI)
no
0.26
5
b2320
pdxB
erythronate-4-phosphate dehydrogenase (NCBI)
no
0.25
6
b0750
nadA
quinolinate synthetase (NCBI)
no
0.24
7
b2775
yqcE
predicted transporter (NCBI)
no
0.24
8
b3849
trkH
potassium transporter (NCBI)
no
0.24
9
b1256
ompW
outer membrane protein W (NCBI)
no
0.23
10
b3993
thiE
thiamine-phosphate pyrophosphorylase (NCBI)
no
0.23
11
b3143
yraI
predicted periplasmic pilin chaperone (NCBI)
no
0.23
12
b3994
thiC
thiamine biosynthesis protein ThiC (NCBI)
no
0.22
13
b0437
clpP
ATP-dependent Clp protease proteolytic subunit (NCBI)
no
0.22
14
b1084
rne
fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein (NCBI)
no
0.22
15
b1235
rssB
response regulator of RpoS (NCBI)
no
0.22
16
b2144
sanA
hypothetical protein (NCBI)
no
0.21
17
b3666
uhpT
sugar phosphate antiporter (NCBI)
no
0.21
18
b1693
aroD
3-dehydroquinate dehydratase (NCBI)
no
0.21
19
b2564
pdxJ
pyridoxal phosphate biosynthetic protein (NCBI)
no
0.21
20
b3625
rfaY
lipopolysaccharide core biosynthesis protein (NCBI)
no
0.21
Or look for
negative cofitness