Top cofit genes for b4239 from Escherichia coli BW25113

treC: trehalose-6-P hydrolase (NCBI)
SEED: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
KEGG: trehalose-6-phosphate hydrolase

Rank	Hit	Name	Description	Conserved?	Cofitness
1	b3806	cyaA	adenylate cyclase (NCBI)	0.89	0.39
2	b2935	tktA	transketolase 1, thiamin-binding (NCBI)	0.85	0.38
3	b3725	pstB	phosphate transporter subunit (NCBI)	0.26	0.37
4	b3290	trkA	potassium transporter peripheral membrane component (NCBI)	0.45	0.37
5	b4089	rpiR	transcriptional repressor of rpiB expression (VIMSS)	no	0.37
6	b3426	glpD	sn-glycerol-3-phosphate dehydrogenase, aerobic, FAD/NAD(P)-binding (NCBI)	no	0.37
7	b0890	ftsK	DNA-binding membrane protein required for chromosome resolution and partitioning (NCBI)	no	0.36
8	b3727	pstC	phosphate transporter subunit (NCBI)	no	0.36
9	b0630	lipB	protein of lipoate biosynthesis (VIMSS)	no	0.36
10	b0200	gmhB	hypothetical protein (NCBI)	no	0.35
11	b3386	rpe	ribulose-phosphate 3-epimerase (NCBI)	no	0.35
12	b2240	glpT	sn-glycerol-3-phosphate transporter (NCBI)	no	0.34
13	b2820	recB	exonuclease V (RecBCD complex), beta subunit (NCBI)	0.73	0.33
14	b2567	rnc	ribonuclease III (NCBI)	0.29	0.33
15	b4177	purA	adenylosuccinate synthetase (NCBI)	0.70	0.33
16	b4443	gcvB	GcvB sRNA gene divergent from gcvA (RefSeq)	no	0.32
17	b2894	xerD	site-specific tyrosine recombinase XerD (NCBI)	0.74	0.31
18	b3625	rfaY	lipopolysaccharide core biosynthesis protein (NCBI)	no	0.31
19	b2699	recA	recombinase A (NCBI)	0.17	0.31
20	b2822	recC	exonuclease V (RecBCD complex), gamma chain (NCBI)	0.79	0.30

Or look for negative cofitness