Top cofit genes for b4121 from Escherichia coli BW25113

yjdF: conserved inner membrane protein (NCBI)
SEED: Inner membrane protein yjdF
KEGG: putative membrane protein

Rank	Hit	Name	Description	Conserved?	Cofitness
1	b1444	ydcW	medium chain aldehyde dehydrogenase (NCBI)	no	0.24
2	b3754	hsrA	predicted multidrug or homocysteine efflux system (NCBI)	no	0.20
3	b3063	ygjE	predicted tartrate:succinate antiporter (NCBI)	no	0.20
4	b2550	yphH	putative NAGC-like transcriptional regulator (VIMSS)	no	0.20
5	b1930	yedF	hypothetical protein (NCBI)	no	0.19
6	b0992	yccM	predicted 4Fe-4S membrane protein (NCBI)	no	0.19
7	b0251	yafY	CP4-6 prophage; predicted DNA-binding transcriptional regulator (RefSeq)	no	0.18
8	b2473	ypfH	orf, hypothetical protein (VIMSS)	0.15	0.18
9	b1234	rssA	conserved protein (RefSeq)	0.70	0.18
10	b1392	paaE	predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation (NCBI)	no	0.18
11	b2124	yehS	hypothetical protein (NCBI)	0.30	0.18
12	b2198	ccmD	cytochrome c biogenesis protein (NCBI)	no	0.18
13	b0860	artJ	arginine transporter subunit (NCBI)	no	0.18
14	b1539	ydfG	L-allo-threonine dehydrogenase, NAD(P)-binding (NCBI)	no	0.17
15	b0964	yccT	hypothetical protein (NCBI)	no	0.17
16	b0898	ycaD	putative MFS family transporter protein (NCBI)	no	0.17
17	b2322	yfcJ	predicted transporter (NCBI)	0.72	0.17
18	b0913	ycaI	orf, hypothetical protein (VIMSS)	0.32	0.17
19	b3399	yrfG	putative phosphatase (VIMSS)	no	0.17
20	b2176	rtn	hypothetical protein (NCBI)	no	0.16

Or look for negative cofitness