Top cofit genes for b3964 from Escherichia coli BW25113

yijD: conserved inner membrane protein (NCBI)
SEED: Putative inner membrane protein

Rank	Hit	Name	Description	Conserved?	Cofitness
1	b3196	yrbG	predicted calcium/sodium:proton antiporter (NCBI)	0.51	0.34
2	b2960	yggH	tRNA(m7G46)-methyltransferase (NCBI)	0.32	0.30
3	b1831	proQ	putative solute/DNA competence effector (NCBI)	no	0.30
4	b0190	yaeQ	hypothetical protein (NCBI)	0.33	0.30
5	b3283	yrdD	predicted DNA topoisomerase (NCBI)	no	0.27
6	b2182	bcr	bicyclomycin/multidrug efflux system (NCBI)	0.38	0.26
7	b3133	agaV	PTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 2 (EIIB-AGA) (VIMSS)	no	0.26
8	b0613	citG	triphosphoribosyl-dephospho-CoA transferase (NCBI)	0.43	0.25
9	b3197	kdsD	D-arabinose 5-phosphate isomerase (NCBI)	0.34	0.25
10	b0468	ybaN	conserved inner membrane protein (NCBI)	0.63	0.25
11	b2398	yfeC	orf, hypothetical protein (VIMSS)	0.31	0.25
12	b1056	yceI	hypothetical protein (NCBI)	0.54	0.24
13	b2742	nlpD	predicted outer membrane lipoprotein (NCBI)	no	0.24
14	b2300	yfcE	orf, hypothetical protein (VIMSS)	no	0.24
15	b1999	yeeP	putative histone (VIMSS)	no	0.23
16	b1664	ydhQ	hypothetical protein (NCBI)	0.44	0.23
17	b2242	glpB	anaerobic glycerol-3-phosphate dehydrogenase subunit B (NCBI)	no	0.22
18	b2361	b2361	orf, hypothetical protein (VIMSS)	no	0.22
19	b1059	solA	N-methyltryptophan oxidase, FAD-binding (NCBI)	no	0.22
20	b4472	yhdP	conserved membrane protein, predicted transporter (NCBI)	0.60	0.22

Or look for negative cofitness