Top cofit genes for b3935 from Escherichia coli BW25113

priA: primosome assembly protein PriA (NCBI)
SEED: Helicase PriA essential for oriC/DnaA-independent DNA replication
KEGG: primosomal protein N' (replication factor Y) (superfamily II helicase)

Rank Hit Name Description Conserved? Cofitness  
1 b2616 recN recombination and repair protein (NCBI) no 0.45
2 b4201 priB primosomal replication protein N (NCBI) no 0.37
3 b2945 endA DNA-specific endonuclease I (NCBI) no 0.37
4 b2819 recD exonuclease V (RecBCD complex), alpha chain (NCBI) no 0.36
5 b2509 xseA exodeoxyribonuclease VII large subunit (NCBI) no 0.35
6 b0611 rna ribonuclease I (NCBI) no 0.35
7 b3652 recG ATP-dependent DNA helicase (NCBI) no 0.32
8 b3387 dam DNA adenine methylase (NCBI) 0.73 0.32
9 b3813 uvrD DNA-dependent ATPase I and helicase II (NCBI) 0.83 0.30
10 b3163 nlpI hypothetical protein (NCBI) no 0.30
11 b2184 yejH DNA damage response helicase (yejH or radD) (from data) no 0.28
12 b0463 acrA multidrug efflux system (NCBI) no 0.28
13 b0462 acrB multidrug efflux system protein (NCBI) no 0.27
14 b0053 surA peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI) no 0.27
15 b3035 tolC outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes (VIMSS) no 0.27
16 b2892 recJ ssDNA exonuclease, 5' --> 3'-specific (NCBI) 0.74 0.26
17 b1863 ruvC Holliday junction resolvase (NCBI) 0.82 0.26
18 b3052 rfaE fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) no 0.26
19 b1685 ydiH predicted protein (RefSeq) no 0.26
20 b3620 rfaF ADP-heptose:LPS heptosyltransferase II (NCBI) no 0.26

Or look for negative cofitness