Top cofit genes for b3934 from Escherichia coli BW25113

cytR: DNA-binding transcriptional dual regulator (NCBI)
SEED: Transcriptional (co)regulator CytR
KEGG: LacI family transcriptional regulator, repressor for deo operon, udp, cdd, tsx, nupC, and nupG

Rank	Hit	Name	Description	Conserved?	Cofitness
1	b0840	deoR	DNA-binding transcriptional repressor (NCBI)	0.44	0.67
2	b1042	csgA	cryptic curlin major subunit (NCBI)	no	0.56
3	b2127	mlrA	DNA-binding transcriptional regulator (NCBI)	no	0.52
4	b1037	csgG	outer membrane lipoprotein (NCBI)	no	0.52
5	b1041	csgB	curlin nucleator protein, minor subunit in curli complex (NCBI)	no	0.49
6	b2101	yegW	predicted DNA-binding transcriptional regulator (NCBI)	0.25	0.46
7	b4381	deoC	deoxyribose-phosphate aldolase (NCBI)	0.81	0.46
8	b4380	yjjI	hypothetical protein (NCBI)	no	0.45
9	b1341	b1341	orf, hypothetical protein (VIMSS)	0.26	0.45
10	b1038	csgF	predicted transport protein (NCBI)	0.45	0.42
11	b1040	csgD	DNA-binding transcriptional activator in two-component regulatory system (NCBI)	no	0.42
12	b3755	yieP	predicted transcriptional regulator (NCBI)	0.74	0.42
13	b2067	yegE	predicted diguanylate cyclase, GGDEF domain signalling protein (NCBI)	no	0.41
14	b2218	rcsC	hybrid sensory kinase in two-component regulatory system with RcsB and YojN (RefSeq)	0.57	0.39
15	b4256	yjgM	predicted acetyltransferase (NCBI)	no	0.39
16	b1039	csgE	predicted transport protein (NCBI)	no	0.36
17	b4382	deoA	thymidine phosphorylase (NCBI)	0.25	0.35
18	b2465	tktB	transketolase 2, thiamin-binding (NCBI)	0.44	0.35
19	b2749	ygbE	conserved inner membrane protein (NCBI)	no	0.35
20	b1222	narX	sensory histidine kinase in two-component regulatory system with NarL (NCBI)	no	0.32

Or look for negative cofitness