Top cofit genes for b3929 from Escherichia coli BW25113

rraA: ribonuclease activity regulator protein RraA (NCBI)
SEED: Ribonuclease E inhibitor RraA
KEGG: regulator of ribonuclease activity A

Rank	Hit	Name	Description	Conserved?	Cofitness
1	b1085	b1085	orf, hypothetical protein (VIMSS)	no	0.67
2	b1725	yniA	predicted phosphotransferase/kinase (NCBI)	0.39	0.61
3	b3753	rbsR	DNA-binding transcriptional repressor of ribose metabolism (NCBI)	0.32	0.61
4	b0240	crl	DNA-binding transcriptional regulator (NCBI)	0.35	0.60
5	b0382	yaiB	hypothetical protein (NCBI)	0.39	0.60
6	b2741	rpoS	RNA polymerase sigma factor (NCBI)	0.35	0.55
7	b1824	yobF	hypothetical protein (NCBI)	no	0.55
8	b4071	nrfB	formate-dependent nitrite reductase; a penta-haeme cytochrome c (VIMSS)	no	0.52
9	b0955	ycbZ	predicted peptidase (NCBI)	0.48	0.52
10	b2829	ptsP	fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI)	0.45	0.50
11	b3523	yhjE	predicted transporter (NCBI)	0.41	0.48
12	b1823	cspC	stress protein, member of the CspA-family (NCBI)	no	0.48
13	b2576	srmB	ATP-dependent RNA helicase (NCBI)	0.59	0.47
14	b3102	yqjG	predicted S-transferase (NCBI)	0.37	0.45
15	b4172	hfq	RNA-binding protein Hfq (NCBI)	no	0.45
16	b2229	b2229	orf, hypothetical protein (VIMSS)	0.49	0.44
17	b1191	b1191	orf, hypothetical protein (VIMSS)	0.88	0.44
18	b3752	rbsK	ribokinase (NCBI)	0.31	0.44
19	b0059	hepA	ATP-dependent helicase HepA (NCBI)	0.53	0.44
20	b0503	ybbB	tRNA 2-selenouridine synthase, selenophosphate-dependent (NCBI)	0.48	0.44

Or look for negative cofitness