Top cofit genes for b3669 from Escherichia coli BW25113

uhpA: DNA-binding response regulator in two-component regulatory system wtih UhpB (NCBI)
SEED: Transcriptional regulatory protein UhpA
KEGG: two-component system, NarL family, uhpT operon response regulator UhpA

Rank	Hit	Name	Description	Conserved?	Cofitness
1	b4095	phnM	carbon-phosphorus lyase complex subunit (NCBI)	no	0.32
2	b2917	yliK	methylmalonyl-CoA mutase (NCBI)	no	0.31
3	b0271	yagH	CP4-6 prophage; predicted xylosidase/arabinosidase (NCBI)	0.63	0.31
4	b0153	fhuB	fused iron-hydroxamate transporter subunits of ABC superfamily: membrane components (NCBI)	no	0.29
5	b3998	nfi	endonuclease V (deoxyinosine 3'endoduclease) (VIMSS)	no	0.29
6	b3533	yhjO	putative cellulose synthase (VIMSS)	no	0.28
7	b0795	ybhG	hypothetical protein (NCBI)	0.29	0.26
8	b3667	uhpC	regulator of uhpT (VIMSS)	0.80	0.26
9	b4598	yncL	hypothetical protein (RefSeq)	no	0.26
10	b2230	yfaA	orf, hypothetical protein (VIMSS)	no	0.26
11	b2797	sdaB	L-serine deaminase II (NCBI)	0.42	0.26
12	b3453	ugpB	glycerol-3-phosphate transporter subunit (NCBI)	no	0.25
13	b3668	uhpB	sensor histidine protein kinase phosphorylates UhpA (VIMSS)	0.96	0.25
14	b0152	fhuD	iron-hydroxamate transporter subunit (NCBI)	no	0.25
15	b3025	qseB	DNA-binding response regulator in two-component regulatory system with QseC (NCBI)	no	0.25
16	b2204	napH	quinol dehydrogenase membrane component (NCBI)	no	0.25
17	b3422	rtcR	sigma 54-dependent transcriptional regulator of rtcBA expression (NCBI)	no	0.24
18	b4094	phnN	ribose 1,5-bisphosphokinase (NCBI)	no	0.24
19	b4385	yjjJ	predicted DNA-binding transcriptional regulator (NCBI)	no	0.24
20	b4064	yjcD	predicted permease (NCBI)	no	0.24

Or look for negative cofitness