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Cofit
Protein
Homologs
Top cofit genes for b3644 from
Escherichia coli BW25113
yicC
:
hypothetical protein (NCBI)
SEED: Protein YicC
Rank
Hit
Name
Description
Conserved?
Cofitness
1
b1831
proQ
putative solute/DNA competence effector (NCBI)
0.87
0.52
2
b1824
yobF
hypothetical protein (NCBI)
0.66
0.45
3
b3753
rbsR
DNA-binding transcriptional repressor of ribose metabolism (NCBI)
0.85
0.45
4
b2317
dedA
conserved inner membrane protein (NCBI)
0.73
0.44
5
b3199
yrbK
hypothetical protein (NCBI)
0.68
0.43
6
b3752
rbsK
ribokinase (NCBI)
0.87
0.43
7
b3102
yqjG
predicted S-transferase (NCBI)
0.22
0.42
8
b3156
yhbS
predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI)
0.88
0.41
9
b2829
ptsP
fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI)
0.75
0.41
10
b1085
b1085
orf, hypothetical protein (VIMSS)
no
0.41
11
b3197
kdsD
D-arabinose 5-phosphate isomerase (NCBI)
0.13
0.40
12
b2474
ypfI
predicted hydrolase (NCBI)
0.74
0.40
13
b3929
rraA
ribonuclease activity regulator protein RraA (NCBI)
0.75
0.40
14
b1916
sdiA
DNA-binding transcriptional activator (NCBI)
0.23
0.39
15
b4450
arcZ
sRNA antisense regulator of tpx and sdaA, Hfq-dependent (RefSeq)
no
0.39
16
b3632
rfaQ
lipopolysaccharide core biosynthesis protein (NCBI)
no
0.39
17
b4000
hupA
HU, DNA-binding transcriptional regulator, alpha subunit (NCBI)
0.92
0.39
18
b2512
yfgL
protein assembly complex, lipoprotein component (NCBI)
0.73
0.38
19
b4260
pepA
leucyl aminopeptidase (NCBI)
0.76
0.38
20
b0605
ahpC
alkyl hydroperoxide reductase, C22 subunit (NCBI)
0.73
0.38
Or look for
negative cofitness