Top cofit genes for b3521 from Escherichia coli BW25113

yhjC: predicted DNA-binding transcriptional regulator (RefSeq)
SEED: LysR family transcriptional regulator YhjC

Rank	Hit	Name	Description	Conserved?	Cofitness
1	b0882	clpA	ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI)	0.25	0.36
2	b4174	hflK	modulator for HflB protease specific for phage lambda cII repressor (NCBI)	no	0.31
3	b4175	hflC	modulator for HflB protease specific for phage lambda cII repressor (NCBI)	0.41	0.31
4	b4180	rlmB	23S rRNA (Gm2251)-methyltransferase (NCBI)	0.40	0.29
5	b0400	phoR	sensory histidine kinase in two-component regulatory system with PhoB (NCBI)	0.55	0.28
6	b1982	amn	AMP nucleosidase (NCBI)	no	0.28
7	b0632	dacA	D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI)	0.23	0.27
8	b0926	ycbK	hypothetical protein (NCBI)	no	0.27
9	b2493	yfgO	predicted inner membrane protein (NCBI)	0.43	0.27
10	b3497	yhiQ	predicted SAM-dependent methyltransferase (NCBI)	no	0.26
11	b3289	rsmB	16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI)	no	0.26
12	b0055	djlA	Dna-J like membrane chaperone protein (NCBI)	0.23	0.26
13	b2808	gcvA	DNA-binding transcriptional dual regulator (NCBI)	0.40	0.25
14	b2786	barA	hybrid sensory histidine kinase, in two-component regulatory system with UvrY (NCBI)	0.40	0.24
15	b4022	yjbC	23S rRNA pseudouridine synthase (NCBI)	no	0.24
16	b3825	pldB	lysophospholipase L(2) (NCBI)	no	0.23
17	b4218	ytfL	predicted inner membrane protein (NCBI)	0.35	0.23
18	b4242	mgtA	magnesium transporter (NCBI)	0.37	0.23
19	b0051	ksgA	dimethyladenosine transferase (NCBI)	no	0.23
20	b4260	pepA	leucyl aminopeptidase (NCBI)	no	0.22

Or look for negative cofitness