Top cofit genes for b3393 from Escherichia coli BW25113

yrfB: hypothetical protein (NCBI)
SEED: Type IV pilus biogenesis protein PilO
KEGG: pilus assembly protein HofO

Rank	Hit	Name	Description	Conserved?	Cofitness
1	b3391	hofQ	predicted fimbrial transporter (NCBI)	no	0.25
2	b3392	yrfA	orf, hypothetical protein (VIMSS)	0.43	0.21
3	b2406	xapB	xanthosine transporter (NCBI)	no	0.19
4	b3667	uhpC	regulator of uhpT (VIMSS)	no	0.18
5	b3475	acpT	holo-(acyl carrier protein) synthase 2 (NCBI)	no	0.17
6	b0238	gpt	xanthine phosphoribosyltransferase (NCBI)	no	0.17
7	b4277	yjgZ	KpLE2 phage-like element; predicted protein (NCBI)	no	0.17
8	b3955	yijP	conserved inner membrane protein (NCBI)	no	0.17
9	b0825	mipB	putative transaldolase (VIMSS)	no	0.17
10	b0598	cstA	carbon starvation protein (NCBI)	no	0.16
11	b2186	yejK	nucleoid-associated protein NdpA (NCBI)	0.44	0.16
12	b3647	yicF	putative enzyme (VIMSS)	no	0.15
13	b1431	ydcL	predicted lipoprotein (NCBI)	0.48	0.15
14	b2226	yfaQ	hypothetical protein (NCBI)	no	0.15
15	b1639	ydhA	orf, hypothetical protein (VIMSS)	no	0.15
16	b4088	alsB	D-allose transporter subunit (NCBI)	no	0.15
17	b3370	yhfM	putative amino acid/amine transport protein (VIMSS)	no	0.15
18	b4323	uxuB	D-mannonate oxidoreductase, NAD-binding (NCBI)	no	0.14
19	b1011	b1011	putative synthetase (VIMSS)	0.27	0.14
20	b4136	dipZ	thiol:disulfide interchange protein precursor (NCBI)	no	0.14

Or look for negative cofitness