Top cofit genes for b3392 from Escherichia coli BW25113

yrfA: orf, hypothetical protein (VIMSS)
SEED: Type IV pilus biogenesis protein PilP
KEGG: pilus assembly protein HofP

Rank	Hit	Name	Description	Conserved?	Cofitness
1	b3391	hofQ	predicted fimbrial transporter (NCBI)	0.49	0.78
2	b3963	fabR	DNA-binding transcriptional repressor (RefSeq)	0.37	0.45
3	b2494	yfgC	predicted peptidase (NCBI)	0.63	0.44
4	b3197	kdsD	D-arabinose 5-phosphate isomerase (NCBI)	no	0.43
5	b2617	smpA	small membrane protein A (VIMSS)	0.81	0.42
6	b2572	rseA	anti-sigma factor (NCBI)	no	0.41
7	b0547	ybcN	DLP12 prophage; predicted protein (NCBI)	no	0.40
8	b2512	yfgL	protein assembly complex, lipoprotein component (NCBI)	no	0.40
9	b1604	ydgH	hypothetical protein (NCBI)	no	0.40
10	b3196	yrbG	predicted calcium/sodium:proton antiporter (NCBI)	no	0.39
11	b4509	ylcG	DLP12 prophage; predicted protein (NCBI)	no	0.39
12	b0178	hlpA	periplasmic chaperone (NCBI)	0.38	0.38
13	b3687	ibpA	heat shock chaperone (NCBI)	0.16	0.37
14	b3199	yrbK	hypothetical protein (NCBI)	no	0.37
15	b1111	ycfQ	orf, hypothetical protein (VIMSS)	no	0.36
16	b4000	hupA	HU, DNA-binding transcriptional regulator, alpha subunit (NCBI)	no	0.35
17	b0548	ninE	DLP12 prophage; conserved protein (NCBI)	no	0.34
18	b3931	hslU	ATP-dependent protease ATP-binding subunit (NCBI)	0.61	0.34
19	b2571	rseB	periplasmic negative regulator of sigmaE (NCBI)	0.79	0.34
20	b3394	yrfC	predicted fimbrial assembly protein (NCBI)	0.61	0.33

Or look for negative cofitness