Top cofit genes for b3382 from Escherichia coli BW25113

yhfY: orf, hypothetical protein (VIMSS)
SEED: Protein containing PTS-regulatory domain

Rank	Hit	Name	Description	Conserved?	Cofitness
1	b1343	dbpA	ATP-dependent RNA helicase, specific for 23S rRNA (NCBI)	no	0.21
2	b1528	ydeA	sugar efflux transporter (NCBI)	no	0.20
3	b1796	yoaG	hypothetical protein (NCBI)	no	0.19
4	b0069	sgrR	DNA-binding transcriptional regulator (NCBI)	no	0.18
5	b2627	yfjK	CP4-57 prophage; conserved protein (NCBI)	no	0.18
6	b1513	lsrA	fused AI2 transporter subunits of ABC superfamily: ATP-binding components (NCBI)	no	0.17
7	b4568	ytjA	predicted protein (RefSeq)	no	0.17
8	b4694	yagP	no description	no	0.16
9	b1972	yedZ	hypothetical protein (NCBI)	no	0.16
10	b1738	chbB	N,N'-diacetylchitobiose-specific enzyme IIB component of PTS (NCBI)	no	0.16
11	b4112	basS	sensory histidine kinase in two-component regulatory system with BasR (NCBI)	no	0.16
12	b0995	torR	DNA-binding response regulator in two-component regulatory system with TorS (NCBI)	0.64	0.16
13	b3898	frvX	predicted endo-1,4-beta-glucanase (NCBI)	no	0.15
14	b4622	ytcA	hypothetical protein (RefSeq)	no	0.15
15	b4326	yjiD	orf, hypothetical protein (VIMSS)	no	0.15
16	b4110	yjcZ	orf, hypothetical protein (VIMSS)	no	0.15
17	b0830	yliB	predicted peptide transporter subunit: periplasmic-binding component of ABC superfamily (NCBI)	no	0.15
18	b1562	hokD	Qin prophage; small toxic polypeptide (NCBI)	no	0.15
19	b3557	insJ	IS150 protein InsA (NCBI)	no	0.15
20	b4409	blr	beta-lactam resistance membrane protein (NCBI)	no	0.15

Or look for negative cofitness