Top cofit genes for b3355 from Escherichia coli BW25113

prkB: predicted phosphoribulokinase (NCBI)
SEED: Phosphoribulokinase (EC 2.7.1.19) homolog, function unknown
KEGG: phosphoribulokinase

Rank	Hit	Name	Description	Conserved?	Cofitness
1	b3829	metE	5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase (NCBI)	0.54	0.41
2	b3993	thiE	thiamine-phosphate pyrophosphorylase (NCBI)	no	0.41
3	b3828	metR	DNA-binding transcriptional activator, homocysteine-binding (NCBI)	0.55	0.41
4	b3994	thiC	thiamine biosynthesis protein ThiC (NCBI)	0.55	0.40
5	b3888	yiiD	predicted acetyltransferase (NCBI)	0.94	0.39
6	b2320	pdxB	erythronate-4-phosphate dehydrogenase (NCBI)	no	0.38
7	b2103	thiD	phosphomethylpyrimidine kinase (NCBI)	0.40	0.37
8	b3992	thiF	thiamin biosynthesis, thiazole moiety (VIMSS)	no	0.37
9	b0052	pdxA	4-hydroxythreonine-4-phosphate dehydrogenase (NCBI)	no	0.37
10	b1859	znuB	high-affinity zinc transporter membrane component (NCBI)	no	0.36
11	b3991	thiG	thiamin biosynthesis, thiazole moiety (VIMSS)	0.44	0.36
12	b3748	rbsD	D-ribose pyranase [EC:5.4.99.62] (from data)	no	0.36
13	b0223	yafJ	predicted amidotransfease (NCBI)	0.39	0.34
14	b3354	yheU	hypothetical protein (NCBI)	0.53	0.34
15	b2422	cysA	sulfate/thiosulfate transporter subunit (NCBI)	0.93	0.34
16	b3990	thiH	thiamine biosynthesis protein ThiH (NCBI)	0.40	0.34
17	b1129	phoQ	sensory histidine kinase in two-compoent regulatory system with PhoP (NCBI)	0.85	0.33
18	b2564	pdxJ	pyridoxal phosphate biosynthetic protein (NCBI)	no	0.33
19	b0523	purE	phosphoribosylaminoimidazole carboxylase catalytic subunit (NCBI)	0.45	0.33
20	b4006	purH	bifunctionalphosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (NCBI)	0.45	0.33

Or look for negative cofitness