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Cofit
Protein
Homologs
Top cofit genes for b3190 from
Escherichia coli BW25113
yrbA
:
orf, hypothetical protein (VIMSS)
SEED: YrbA protein
Rank
Hit
Name
Description
Conserved?
Cofitness
1
b2240
glpT
sn-glycerol-3-phosphate transporter (NCBI)
0.82
0.48
2
b4102
phnF
predicted DNA-binding transcriptional regulator of phosphonate uptake and biodegradation (NCBI)
no
0.43
3
b4101
phnG
carbon-phosphorus lyase complex subunit (NCBI)
0.44
0.38
4
b4106
phnC
phosphonate/organophosphate ester transporter subunit (NCBI)
no
0.37
5
b4105
phnD
phosphonate/organophosphate ester transporter subunit (NCBI)
no
0.36
6
b4104
phnE
phosphonate/organophosphate ester transporter subunit (NCBI)
no
0.36
7
b2531
iscR
DNA-binding transcriptional repressor (NCBI)
0.76
0.31
8
b4089
rpiR
transcriptional repressor of rpiB expression (VIMSS)
no
0.29
9
b4239
treC
trehalose-6-P hydrolase (NCBI)
0.32
0.28
10
b4098
phnJ
carbon-phosphorus lyase complex subunit (NCBI)
no
0.27
11
b3414
gntY
predicted gluconate transport associated protein (NCBI)
0.88
0.27
12
b3926
glpK
glycerol kinase (NCBI)
0.75
0.24
13
b2814
metZ
tRNA-Met (NCBI)
no
0.23
14
b3626
rfaJ
UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase (NCBI)
no
0.22
15
b0191
yaeJ
hypothetical protein (NCBI)
no
0.22
16
b3892
fdoI
formate dehydrogenase-O, cytochrome b556 subunit (NCBI)
0.30
0.22
17
b4328
iadA
isoaspartyl dipeptidase (NCBI)
no
0.22
18
b3778
rep
DNA helicase and single-stranded DNA-dependent ATPase (NCBI)
no
0.22
19
b0192
nlpE
lipoprotein involved with copper homeostasis and adhesion (NCBI)
0.29
0.21
20
b3802
hemY
predicted protoheme IX synthesis protein (NCBI)
no
0.21
Or look for
negative cofitness