Top cofit genes for b3159 from Escherichia coli BW25113

yhbV: orf, hypothetical protein (VIMSS)
SEED: FIG139928: Putative protease

Rank	Hit	Name	Description	Conserved?	Cofitness
1	b3158	yhbU	predicted peptidase (collagenase-like) (NCBI)	0.99	0.53
2	b4237	nrdG	anaerobic ribonucleotide reductase activating protein (NCBI)	0.58	0.47
3	b4238	nrdD	anaerobic ribonucleoside triphosphate reductase (NCBI)	0.64	0.47
4	b4041	plsB	glycerol-3-phosphate acyltransferase (VIMSS)	no	0.35
5	b4053	alr	alanine racemase (NCBI)	0.29	0.33
6	b1123	potD	spermidine/putrescine ABC transporter periplasmic substrate-binding protein (NCBI)	no	0.32
7	b3115	tdcD	propionate kinase/acetate kinase C, anaerobic (RefSeq)	no	0.30
8	b1126	potA	putrescine/spermidine ABC transporter ATPase protein (NCBI)	no	0.28
9	b1125	potB	spermidine/putrescine ABC transporter membrane protein (NCBI)	no	0.28
10	b1334	fnr	DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI)	0.90	0.28
11	b4131	cadA	lysine decarboxylase 1 (NCBI)	no	0.27
12	b1617	uidA	beta-D-glucuronidase (NCBI)	no	0.26
13	b3930	menA	1,4-dihydroxy-2-naphthoate octaprenyltransferase (NCBI)	0.68	0.25
14	b4132	cadB	predicted lysine/cadaverine transporter (NCBI)	no	0.25
15	b1124	potC	spermidine/putrescine ABC transporter membrane protein (NCBI)	no	0.25
16	b2081	yegQ	predicted peptidase (NCBI)	0.75	0.25
17	b3157	yhbT	predicted lipid carrier protein (NCBI)	0.49	0.25
18	b3114	tdcE	pyruvate formate-lyase 4/2-ketobutyrate formate-lyase (NCBI)	0.27	0.24
19	b0425	panE	2-dehydropantoate 2-reductase (NCBI)	no	0.22
20	b4577	sgrS	small antisense RNA (NCBI)	no	0.22

Or look for negative cofitness