Top cofit genes for b3144 from Escherichia coli BW25113

yraJ: predicted outer membrane protein (NCBI)
SEED: type 1 fimbriae anchoring protein FimD
KEGG: outer membrane usher protein

Rank	Hit	Name	Description	Conserved?	Cofitness
1	b0565	ompT	DLP12 prophage; outer membrane protease VII (outer membrane protein 3b) (NCBI)	no	0.34
2	b1831	proQ	putative solute/DNA competence effector (NCBI)	no	0.33
3	b3133	agaV	PTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 2 (EIIB-AGA) (VIMSS)	no	0.31
4	b2945	endA	DNA-specific endonuclease I (NCBI)	no	0.31
5	b0611	rna	ribonuclease I (NCBI)	0.27	0.30
6	b1055	yceA	hypothetical protein (NCBI)	no	0.28
7	b0819	ybiS	hypothetical protein (NCBI)	no	0.27
8	b1725	yniA	predicted phosphotransferase/kinase (NCBI)	no	0.27
9	b2057	wcaC	predicted glycosyl transferase (NCBI)	no	0.27
10	b1822	rrmA	23S rRNA m1G745 methyltransferase (NCBI)	no	0.27
11	b4486	yjiV	conserved protein (pseudogene) (RefSeq)	no	0.25
12	b0713	ybgL	hypothetical protein (NCBI)	no	0.25
13	b0553	nmpC	DLP12 prophage; truncated outer membrane porin (pseudogene) (RefSeq)	no	0.25
14	b2819	recD	exonuclease V (RecBCD complex), alpha chain (NCBI)	no	0.25
15	b3506	slp	outer membrane protein induced after carbon starvation (VIMSS)	0.49	0.25
16	b2000	flu	CP4-44 prophage; antigen 43 (Ag43) phase-variable biofilm formation autotransporter (NCBI)	no	0.25
17	b2787	gudD	(D)-glucarate dehydratase 1 (NCBI)	no	0.24
18	b3265	acrE	cytoplasmic membrane lipoprotein (NCBI)	no	0.24
19	b1591	b1591	putative oxidoreductase component (VIMSS)	0.23	0.24
20	b2793	syd	SecY interacting protein Syd (NCBI)	no	0.24

Or look for negative cofitness