Top cofit genes for b3118 from Escherichia coli BW25113

tdcA: DNA-binding transcriptional activator (NCBI)
SEED: Threonine catabolic operon transcriptional activator TdcA
KEGG: LysR family transcriptional regulator, tdc operon transcriptional activator

Rank	Hit	Name	Description	Conserved?	Cofitness
1	b2863	ygeQ	orf, hypothetical protein (VIMSS)	no	0.51
2	b2761	ygcB	conserved protein, member of DEAD box family (NCBI)	no	0.51
3	b4116	adiY	DNA-binding transcriptional activator (NCBI)	no	0.50
4	b0834	yliF	predicted diguanylate cyclase (NCBI)	0.79	0.49
5	b4310	yjhT	orf, hypothetical protein (VIMSS)	no	0.49
6	b0833	yliE	conserved inner membrane protein (NCBI)	no	0.48
7	b2109	yehB	predicted outer membrane protein (NCBI)	0.75	0.48
8	b4580	yaiT	no description	no	0.47
9	b1024	ycdS	predicted outer membrane protein (NCBI)	no	0.47
10	b3509	hdeB	orf, hypothetical protein (VIMSS)	no	0.47
11	b3508	yhiD	predicted Mg(2+) transport ATPase inner membrane protein (NCBI)	no	0.45
12	b0138	yadM	putative fimbrial-like protein (VIMSS)	no	0.45
13	b3874	yihN	predicted transporter (NCBI)	no	0.45
14	b0139	htrE	predicted outer membrane usher protein (NCBI)	no	0.45
15	b2370	evgS	hybrid sensory histidine kinase in two-component regulatory system with EvgA (NCBI)	no	0.44
16	b2626	yfjJ	CP4-57 prophage; predicted protein (NCBI)	no	0.43
17	b0533	sfmH	predicted fimbrial-like adhesin protein (RefSeq)	no	0.43
18	b2624	alpA	CP4-57 prophage; DNA-binding transcriptional activator (NCBI)	no	0.43
19	b2271	yfbL	putative aminopeptidase (VIMSS)	no	0.43
20	b2373	oxc	hypothetical protein (NCBI)	no	0.43

Or look for negative cofitness