Top cofit genes for b2912 from Escherichia coli BW25113

ygfA: putative ligase (VIMSS)
SEED: 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2)

Rank	Hit	Name	Description	Conserved?	Cofitness
1	b0438	clpX	ATP-dependent protease ATP-binding subunit (NCBI)	0.58	0.46
2	b0926	ycbK	hypothetical protein (NCBI)	0.51	0.43
3	b4481	rffT	4-alpha-L-fucosyltransferase (NCBI)	0.33	0.43
4	b1865	nudB	dATP pyrophosphohydrolase (NCBI)	0.57	0.42
5	b3791	rffA	TDP-4-oxo-6-deoxy-D-glucose transaminase (NCBI)	0.36	0.41
6	b0439	lon	DNA-binding ATP-dependent protease La (NCBI)	0.71	0.41
7	b0464	acrR	DNA-binding transcriptional repressor (NCBI)	no	0.41
8	b2516	yfgA	hypothetical protein (NCBI)	0.69	0.40
9	b3838	tatB	sec-independent translocase (NCBI)	no	0.39
10	b3169	nusA	transcription elongation factor NusA (NCBI)	no	0.39
11	b3792	wzxE	O-antigen translocase (NCBI)	no	0.39
12	b3790	rffC	TDP-fucosamine acetyltransferase (RefSeq)	0.36	0.37
13	b0437	clpP	ATP-dependent Clp protease proteolytic subunit (NCBI)	no	0.37
14	b1291	sapD	predicted antimicrobial peptide transporter subunit (NCBI)	no	0.37
15	b1530	marR	multiple antibiotic resistance protein; repressor of mar operon (VIMSS)	no	0.36
16	b2175	spr	predicted peptidase, outer membrane lipoprotein (NCBI)	0.54	0.36
17	b1048	mdoG	glucan biosynthesis protein, periplasmic (NCBI)	0.71	0.36
18	b1049	mdoH	glucosyltransferase MdoH (NCBI)	no	0.35
19	b0632	dacA	D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI)	0.61	0.34
20	b1192	ldcA	L,D-carboxypeptidase A (NCBI)	0.47	0.34

Or look for negative cofitness