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Cofit
Protein
Homologs
Top cofit genes for b2888 from
Escherichia coli BW25113
ygfU
:
putative permease (VIMSS)
SEED: Xanthine permease
Rank
Hit
Name
Description
Conserved?
Cofitness
1
b3143
yraI
predicted periplasmic pilin chaperone (NCBI)
0.41
0.37
2
b2761
ygcB
conserved protein, member of DEAD box family (NCBI)
no
0.37
3
b2270
yfbK
hypothetical protein (NCBI)
0.15
0.34
4
b2647
ypjA
putative ATP-binding component of a transport system (VIMSS)
no
0.33
5
b2368
emrK
EmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component (NCBI)
no
0.32
6
b4342
yjiT
orf, hypothetical protein (VIMSS)
no
0.32
7
b0304
ykgC
putative oxidoreductase (VIMSS)
no
0.31
8
b4310
yjhT
orf, hypothetical protein (VIMSS)
no
0.30
9
b0901
ycaK
hypothetical protein (NCBI)
no
0.30
10
b0139
htrE
predicted outer membrane usher protein (NCBI)
0.83
0.30
11
b0703
ybfO
conserved protein, rhs-like (RefSeq)
no
0.30
12
b0562
ybcY
orf, hypothetical protein (VIMSS)
no
0.30
13
b1024
ycdS
predicted outer membrane protein (NCBI)
no
0.30
14
b1799
yeaT
putative transcriptional regulator LYSR-type (VIMSS)
0.32
0.29
15
b2863
ygeQ
orf, hypothetical protein (VIMSS)
no
0.29
16
b3874
yihN
predicted transporter (NCBI)
no
0.29
17
b3680
yidL
predicted DNA-binding transcriptional regulator (RefSeq)
no
0.29
18
b3508
yhiD
predicted Mg(2+) transport ATPase inner membrane protein (NCBI)
no
0.28
19
b3720
bglH
carbohydrate-specific outer membrane porin, cryptic (NCBI)
0.80
0.28
20
b0768
ybhD
predicted DNA-binding transcriptional regulator (RefSeq)
0.30
0.28
Or look for
negative cofitness