Top cofit genes for b2755 from Escherichia coli BW25113

ygbT: hypothetical protein (NCBI)
SEED: CRISPR-associated protein Cas1

Rank	Hit	Name	Description	Conserved?	Cofitness
1	b1256	ompW	outer membrane protein W (NCBI)	0.83	0.32
2	b4310	yjhT	orf, hypothetical protein (VIMSS)	no	0.26
3	b2355	yfdL	CPS-53 (KpLE1) prophage; conserved protein (RefSeq)	no	0.25
4	b0611	rna	ribonuclease I (NCBI)	no	0.25
5	b3558	insK	IS150 conserved protein InsB (NCBI)	no	0.25
6	b4267	idnD	L-idonate 5-dehydrogenase, NAD-binding (NCBI)	0.57	0.24
7	b2888	ygfU	putative permease (VIMSS)	no	0.24
8	b3595	yibJ	predicted Rhs-family protein (RefSeq)	no	0.23
9	b2945	endA	DNA-specific endonuclease I (NCBI)	no	0.23
10	b3143	yraI	predicted periplasmic pilin chaperone (NCBI)	0.53	0.23
11	b0548	ninE	DLP12 prophage; conserved protein (NCBI)	no	0.22
12	b3147	yraM	hypothetical protein (NCBI)	no	0.22
13	b3562	yiaA	orf, hypothetical protein (VIMSS)	no	0.21
14	b0547	ybcN	DLP12 prophage; predicted protein (NCBI)	no	0.21
15	b1520	b1520	orf, hypothetical protein (VIMSS)	no	0.21
16	b1345	intR	Rac prophage; integrase (NCBI)	no	0.21
17	b2351	yfdH	CPS-53 (KpLE1) prophage; bactoprenol glucosyl transferase (NCBI)	no	0.21
18	b1395	paaH	3-hydroxybutyryl-CoA dehydrogenase (NCBI)	no	0.21
19	b4333	yjiK	conserved protein (RefSeq)	no	0.20
20	b3787	rffD	UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI)	0.77	0.20

Or look for negative cofitness