Top cofit genes for b2669 from Escherichia coli BW25113

stpA: DNA binding protein, nucleoid-associated (NCBI)
SEED: DNA-binding protein H-NS
KEGG: DNA-binding protein StpA

Rank	Hit	Name	Description	Conserved?	Cofitness
1	b0889	lrp	DNA-binding transcriptional dual regulator, leucine-binding (NCBI)	no	0.42
2	b2611	ypjD	predicted inner membrane protein (RefSeq)	no	0.39
3	b0563	tfaX	DLP12 prophage; predicted protein (RefSeq)	no	0.37
4	b0400	phoR	sensory histidine kinase in two-component regulatory system with PhoB (NCBI)	no	0.36
5	b0390	aroM	hypothetical protein (NCBI)	no	0.36
6	b3829	metE	5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase (NCBI)	no	0.36
7	b3849	trkH	potassium transporter (NCBI)	no	0.36
8	b0052	pdxA	4-hydroxythreonine-4-phosphate dehydrogenase (NCBI)	no	0.36
9	b3828	metR	DNA-binding transcriptional activator, homocysteine-binding (NCBI)	no	0.35
10	b0632	dacA	D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5) (NCBI)	0.71	0.35
11	b2320	pdxB	erythronate-4-phosphate dehydrogenase (NCBI)	no	0.35
12	b1185	dsbB	reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS)	no	0.35
13	b0928	aspC	aspartate aminotransferase, PLP-dependent (NCBI)	no	0.35
14	b1084	rne	fused ribonucleaseE: endoribonuclease/RNA-binding protein/RNA degradosome binding protein (NCBI)	0.52	0.34
15	b2312	purF	amidophosphoribosyltransferase (NCBI)	0.46	0.34
16	b4005	purD	phosphoribosylamine--glycine ligase (NCBI)	0.46	0.34
17	b4006	purH	bifunctionalphosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (NCBI)	0.46	0.34
18	b0908	aroA	3-phosphoshikimate 1-carboxyvinyltransferase (NCBI)	0.73	0.34
19	b2499	purM	phosphoribosylaminoimidazole synthetase (NCBI)	no	0.33
20	b2564	pdxJ	pyridoxal phosphate biosynthetic protein (NCBI)	no	0.33

Or look for negative cofitness