Top cofit genes for b2604 from Escherichia coli BW25113

yfiN: predicted diguanylate cyclase (NCBI)
SEED: Inner membrane protein YfiN

Rank	Hit	Name	Description	Conserved?	Cofitness
1	b2365	dsdX	predicted transporter (NCBI)	0.51	0.23
2	b3325	yheF	putative general protein secretion protein (VIMSS)	no	0.23
3	b3323	gspA	general secretory pathway component, cryptic (NCBI)	no	0.22
4	b2260	menE	O-succinylbenzoic acid--CoA ligase (NCBI)	no	0.22
5	b2628	yfjL	CP4-57 prophage; predicted protein (NCBI)	no	0.21
6	b4241	treR	trehalose repressor (NCBI)	0.77	0.21
7	b1953	b1953	orf, hypothetical protein (VIMSS)	no	0.20
8	b0932	pepN	aminopeptidase N (NCBI)	0.62	0.20
9	b1004	wrbA	TrpR binding protein WrbA (NCBI)	0.28	0.20
10	b2160	yeiI	predicted kinase (NCBI)	no	0.20
11	b3327	gspF	general secretory pathway component, cryptic (NCBI)	0.28	0.20
12	b2220	atoC	fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein (NCBI)	no	0.20
13	b2009	sbmC	DNA gyrase inhibitor (NCBI)	no	0.20
14	b3216	yhcD	predicted outer membrane protein (NCBI)	0.19	0.19
15	b2632	yfjP	CP4-57 prophage; predicted GTP-binding protein (NCBI)	0.28	0.19
16	b1647	ydhF	predicted oxidoreductase (NCBI)	no	0.19
17	b0107	hofB	conserved protein with nucleoside triphosphate hydrolase domain (NCBI)	no	0.19
18	b0999	cbpM	modulator of CbpA co-chaperone (NCBI)	no	0.19
19	b1432	insQ	IS609 transposase B (RefSeq)	no	0.19
20	b1864	yebC	hypothetical protein (NCBI)	no	0.19

Or look for negative cofitness