Top cofit genes for b2555 from Escherichia coli BW25113

yfhG: hypothetical protein (NCBI)
SEED: putative alpha helix protein

Rank	Hit	Name	Description	Conserved?	Cofitness
1	b2554	yfhA	predicted DNA-binding response regulator in two-component system (NCBI)	0.96	0.52
2	b2556	yfhK	putative 2-component sensor protein (VIMSS)	0.97	0.45
3	b0427	yajR	putative transport protein (VIMSS)	0.74	0.38
4	b0428	cyoE	protoheme IX farnesyltransferase (NCBI)	0.75	0.34
5	b2906	visC	hypothetical protein (NCBI)	no	0.34
6	b0432	cyoA	cytochrome o ubiquinol oxidase subunit II (NCBI)	0.82	0.32
7	b0429	cyoD	cytochrome o ubiquinol oxidase subunit IV (NCBI)	0.86	0.31
8	b1235	rssB	response regulator of RpoS (NCBI)	0.92	0.30
9	b1234	rssA	conserved protein (RefSeq)	0.91	0.30
10	b0430	cyoC	cytochrome o ubiquinol oxidase subunit III (NCBI)	0.87	0.29
11	b1839	yebY	hypothetical protein (NCBI)	no	0.29
12	b2532	yfhQ	predicted methyltransferase (NCBI)	0.40	0.29
13	b0431	cyoB	cytochrome o ubiquinol oxidase subunit I (NCBI)	0.91	0.29
14	b2064	asmA	predicted assembly protein (NCBI)	0.94	0.28
15	b2288	nuoA	NADH dehydrogenase I chain A (VIMSS)	no	0.28
16	b3232	yhcM	conserved protein with nucleoside triphosphate hydrolase domain (NCBI)	0.63	0.28
17	b2280	nuoJ	NADH dehydrogenase subunit J (NCBI)	0.74	0.28
18	b2278	nuoL	NADH dehydrogenase subunit L (NCBI)	0.83	0.28
19	b1162	ycgE	predicted DNA-binding transcriptional regulator (NCBI)	0.33	0.28
20	b3807	cyaY	frataxin-like protein (NCBI)	no	0.27

Or look for negative cofitness