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  • Top cofit genes for b2361 from Escherichia coli BW25113

    b2361: orf, hypothetical protein (VIMSS)
    SEED: Hypothetical protein yfdR

    Rank Hit Name Description Conserved? Cofitness  
    1 b4271 intB KpLE2 phage-like element; predicted integrase (RefSeq) no 0.29
    2 b2351 yfdH CPS-53 (KpLE1) prophage; bactoprenol glucosyl transferase (NCBI) no 0.28
    3 b3507 dctR protein involved in metabolism of C4-dicarboxylates (Katherine Huang) no 0.26
    4 b0646 djlB predicted chaperone (NCBI) no 0.24
    5 b4031 xylE D-xylose transporter (NCBI) no 0.24
    6 b1140 intE e14 prophage; predicted integrase (NCBI) no 0.24
    7 b2353 tfaS orf, hypothetical protein (VIMSS) no 0.24
    8 b2371 yfdE putative enzyme (VIMSS) no 0.23
    9 b4588 ylcH hypothetical protein, DLP12 prophage (RefSeq) no 0.23
    10 b2865 b2865 putative lipoprotein (VIMSS) no 0.23
    11 b3625 rfaY lipopolysaccharide core biosynthesis protein (NCBI) no 0.23
    12 b0703 ybfO conserved protein, rhs-like (RefSeq) no 0.22
    13 b2775 yqcE predicted transporter (NCBI) no 0.22
    14 b3873 yihM predicted sugar phosphate isomerase (NCBI) no 0.22
    15 b3964 yijD conserved inner membrane protein (NCBI) no 0.22
    16 b3143 yraI predicted periplasmic pilin chaperone (NCBI) no 0.21
    17 b2863 ygeQ orf, hypothetical protein (VIMSS) no 0.21
    18 b4204 yjfZ hypothetical protein (NCBI) no 0.21
    19 b2647 ypjA putative ATP-binding component of a transport system (VIMSS) no 0.21
    20 b3324 gspC general secretory pathway component, cryptic (NCBI) no 0.20

    Or look for negative cofitness