Top cofit genes for b2003 from Escherichia coli BW25113

yeeT: CP4-44 prophage; predicted protein (NCBI)
SEED: Uncharacterized protein YkfH

Rank	Hit	Name	Description	Conserved?	Cofitness
1	b2668	ygaP	predicted inner membrane protein with hydrolase activity (NCBI)	no	0.19
2	b1617	uidA	beta-D-glucuronidase (NCBI)	no	0.19
3	b0349	mhpC	2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase (VIMSS)	no	0.18
4	b0295	ykgL	hypothetical protein (NCBI)	no	0.18
5	b0046	kefF	glutathione-regulated potassium-efflux system ancillary protein (NCBI)	no	0.18
6	b2382	ypdC	predicted DNA-binding protein (NCBI)	no	0.17
7	b2012	yeeD	hypothetical protein (NCBI)	no	0.17
8	b0825	mipB	putative transaldolase (VIMSS)	no	0.17
9	b2217	rcsB	DNA-binding response regulator in two-component regulatory system with RcsC and YojN (NCBI)	no	0.17
10	b2406	xapB	xanthosine transporter (NCBI)	no	0.17
11	b4326	yjiD	orf, hypothetical protein (VIMSS)	no	0.17
12	b1366	ydaY	Rac prophage; predicted protein (RefSeq)	no	0.16
13	b1609	rstB	sensory histidine kinase in two-component regulatory system with RstA (NCBI)	no	0.16
14	b1733	chbG	hypothetical protein (NCBI)	no	0.16
15	b4408	csrB	CsrA-binding sRNA, antagonizing CsrA regulation (NCBI)	no	0.16
16	b4070	nrfA	nitrite reductase, formate-dependent, cytochrome (NCBI)	no	0.16
17	b2078	baeS	sensory histidine kinase in two-component regulatory system with BaeR (NCBI)	no	0.15
18	b3427	yzgL	orf, hypothetical protein (VIMSS)	no	0.15
19	b4501	torI	response regulator inhibitor for tor operon (NCBI)	no	0.15
20	b1607	ydgC	conserved inner membrane protein associated with alginate biosynthesis (NCBI)	no	0.15

Or look for negative cofitness