Top cofit genes for b1971 from Escherichia coli BW25113

yedY: hypothetical protein (NCBI)
SEED: Putative sulfite oxidase subunit YedY

Rank	Hit	Name	Description	Conserved?	Cofitness
1	b3509	hdeB	orf, hypothetical protein (VIMSS)	no	0.20
2	b3388	damX	hypothetical protein (NCBI)	0.39	0.18
3	b2863	ygeQ	orf, hypothetical protein (VIMSS)	no	0.18
4	b0140	ecpD	predicted periplasmic pilin chaperone (NCBI)	no	0.18
5	b3387	dam	DNA adenine methylase (NCBI)	no	0.17
6	b4204	yjfZ	hypothetical protein (NCBI)	no	0.16
7	b4127	yjdJ	predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI)	0.34	0.16
8	b0611	rna	ribonuclease I (NCBI)	no	0.16
9	b2945	endA	DNA-specific endonuclease I (NCBI)	0.50	0.15
10	b1164	ycgZ	hypothetical protein (NCBI)	no	0.15
11	b3510	hdeA	acid-resistance protein, possible chaperone , subunit of HdeA dimer, inactive form of acid-resistance protein (Katherine Huang)	no	0.15
12	b0123	cueO	multicopper oxidase (laccase) (NCBI)	no	0.15
13	b3744	asnA	asparagine synthetase AsnA (NCBI)	no	0.15
14	b1289	ycjD	hypothetical protein (NCBI)	no	0.15
15	b1643	ydhI	predicted inner membrane protein (NCBI)	no	0.15
16	b0064	araC	DNA-binding transcriptional dual regulator (NCBI)	0.15	0.15
17	b2819	recD	exonuclease V (RecBCD complex), alpha chain (NCBI)	0.15	0.15
18	b1685	ydiH	predicted protein (RefSeq)	no	0.15
19	b4654	yjdQ	no description	no	0.14
20	b3257	yhdT	conserved inner membrane protein (NCBI)	no	0.14

Or look for negative cofitness