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Cofit
Protein
Homologs
Top cofit genes for b1355 from
Escherichia coli BW25113
b1355
:
orf, hypothetical protein (VIMSS)
SEED: Phage protein
Rank
Hit
Name
Description
Conserved?
Cofitness
1
b0472
recR
recombination protein RecR (NCBI)
no
0.29
2
b3700
recF
recombination protein F (NCBI)
no
0.28
3
b1913
uvrC
excinuclease ABC, subunit C; repair of UV damage to DNA (VIMSS)
no
0.27
4
b1353
sieB
phage superinfection exclusion protein (VIMSS)
no
0.27
5
b2565
recO
DNA repair protein RecO (NCBI)
no
0.26
6
b0779
uvrB
excinuclease ABC subunit B (NCBI)
no
0.25
7
b0577
ybdG
predicted mechanosensitive channel (NCBI)
no
0.25
8
b1184
umuC
DNA polymerase V subunit UmuC (NCBI)
no
0.24
9
b3813
uvrD
DNA-dependent ATPase I and helicase II (NCBI)
no
0.24
10
b4527
b1354
orf, hypothetical protein (VIMSS)
no
0.23
11
b2435
amiA
N-acetylmuramoyl-l-alanine amidase I (NCBI)
no
0.22
12
b0471
ybaB
hypothetical protein (NCBI)
no
0.22
13
b3017
sufI
repressor protein for FtsI (NCBI)
no
0.21
14
b2892
recJ
ssDNA exonuclease, 5' --> 3'-specific (NCBI)
no
0.20
15
b4058
uvrA
excinuclease ABC subunit A (NCBI)
no
0.20
16
b1954
dsrA
regulatory antisense RNA (NCBI)
no
0.20
17
b3660
yicL
predicted inner membrane protein (NCBI)
no
0.20
18
b2314
dedD
putative lipoprotein (VIMSS)
no
0.20
19
b0946
ycbW
orf, hypothetical protein (VIMSS)
no
0.20
20
b3383
yhfZ
hypothetical protein (NCBI)
no
0.19
Or look for
negative cofitness