Top cofit genes for b1234 from Escherichia coli BW25113

rssA: conserved protein (RefSeq)
SEED: UPF0028 protein YchK

Rank	Hit	Name	Description	Conserved?	Cofitness
1	b1235	rssB	response regulator of RpoS (NCBI)	0.95	0.59
2	b3806	cyaA	adenylate cyclase (NCBI)	0.63	0.47
3	b0438	clpX	ATP-dependent protease ATP-binding subunit (NCBI)	no	0.44
4	b0428	cyoE	protoheme IX farnesyltransferase (NCBI)	0.45	0.43
5	b3236	mdh	malate dehydrogenase (NCBI)	0.46	0.43
6	b0432	cyoA	cytochrome o ubiquinol oxidase subunit II (NCBI)	0.42	0.42
7	b3232	yhcM	conserved protein with nucleoside triphosphate hydrolase domain (NCBI)	0.50	0.41
8	b3844	fre	NAD(P)H-flavin reductase (NCBI)	no	0.40
9	b1162	ycgE	predicted DNA-binding transcriptional regulator (NCBI)	0.49	0.39
10	b3398	yrfF	predicted inner membrane protein (NCBI)	no	0.39
11	b2113	mrp	putative ATPase (VIMSS)	no	0.38
12	b0590	fepD	iron-enterobactin transporter subunit (NCBI)	no	0.38
13	b0427	yajR	putative transport protein (VIMSS)	no	0.38
14	b0721	sdhC	succinate dehydrogenase cytochrome b556 large membrane subunit (NCBI)	0.33	0.38
15	b0431	cyoB	cytochrome o ubiquinol oxidase subunit I (NCBI)	0.44	0.38
16	b0437	clpP	ATP-dependent Clp protease proteolytic subunit (NCBI)	no	0.38
17	b0430	cyoC	cytochrome o ubiquinol oxidase subunit III (NCBI)	0.37	0.37
18	b0429	cyoD	cytochrome o ubiquinol oxidase subunit IV (NCBI)	no	0.37
19	b0390	aroM	hypothetical protein (NCBI)	0.87	0.37
20	b0592	fepB	iron-enterobactin transporter subunit (NCBI)	no	0.37

Or look for negative cofitness