Top cofit genes for b1088 from Escherichia coli BW25113

yceD: hypothetical protein (NCBI)
SEED: COG1399 protein, clustered with ribosomal protein L32p
KEGG: uncharacterized protein

Rank	Hit	Name	Description	Conserved?	Cofitness
1	b2576	srmB	ATP-dependent RNA helicase (NCBI)	0.82	0.42
2	b4371	rsmC	16S ribosomal RNA m2G1207 methyltransferase (NCBI)	0.86	0.39
3	b3999	yjaG	hypothetical protein (NCBI)	0.69	0.39
4	b4391	yjjK	fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI)	0.75	0.37
5	b4049	dusA	tRNA-dihydrouridine synthase A (RefSeq)	0.74	0.36
6	b1286	rnb	exoribonuclease II (NCBI)	0.78	0.35
7	b4234	yjgA	hypothetical protein (NCBI)	0.76	0.35
8	b3871	bipA	GTP-binding protein (NCBI)	0.81	0.34
9	b4201	priB	primosomal replication protein N (NCBI)	no	0.34
10	b0948	ycbY	predicted methyltransferase (NCBI)	0.69	0.34
11	b2812	ygdL	hypothetical protein (NCBI)	no	0.34
12	b3184	yhbE	conserved inner membrane protein (NCBI)	0.79	0.34
13	b3341	rpsG	30S ribosomal protein S7 (NCBI)	no	0.33
14	b0623	cspE	cold shock protein E (NCBI)	no	0.33
15	b1835	yebU	putative nucleolar proteins (VIMSS)	0.53	0.32
16	b3351	kefG	glutathione-regulated potassium-efflux system ancillary protein (NCBI)	no	0.32
17	b2829	ptsP	fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI)	0.78	0.31
18	b4375	prfC	peptide chain release factor 3 (NCBI)	0.74	0.31
19	b0949	uup	fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI)	no	0.31
20	b3636	rpmG	50S ribosomal protein L33 (NCBI)	no	0.31

Or look for negative cofitness