Top cofit genes for b1061 from Escherichia coli BW25113

dinI: DNA damage-inducible protein I (NCBI)
SEED: DNA-damage-inducible protein I
KEGG: DNA-damage-inducible protein I

Rank	Hit	Name	Description	Conserved?	Cofitness
1	b4697	yrdF	no description	no	0.24
2	b2715	ascF	fused cellobiose/arbutin/salicin-specific PTS enzymes: IIB component/IC component (NCBI)	no	0.21
3	b0231	dinB	DNA polymerase IV (NCBI)	no	0.21
4	b1653	lhr	predicted ATP-dependent helicase (NCBI)	no	0.20
5	b2160	yeiI	predicted kinase (NCBI)	no	0.20
6	b1584	speG	spermidine N1-acetyltransferase (NCBI)	no	0.20
7	b3483	yhhH	orf, hypothetical protein (VIMSS)	no	0.20
8	b3828	metR	DNA-binding transcriptional activator, homocysteine-binding (NCBI)	0.35	0.19
9	b4625	ryjC	Novel sRNA, function unknown (RefSeq)	no	0.19
10	b1468	narZ	nitrate reductase 2 (NRZ), alpha subunit (NCBI)	0.23	0.19
11	b2207	napD	assembly protein for periplasmic nitrate reductase (NCBI)	no	0.19
12	b2025	hisF	imidazole glycerol phosphate synthase subunit HisF (NCBI)	0.35	0.19
13	b3487	yhiI	predicted HlyD family secretion protein (NCBI)	no	0.19
14	b2103	thiD	phosphomethylpyrimidine kinase (NCBI)	no	0.19
15	b4394	yjjX	orf, hypothetical protein (VIMSS)	0.44	0.18
16	b0756	galM	galactose-1-epimerase (mutarotase) (NCBI)	0.49	0.18
17	b1060	yceP	orf, hypothetical protein (VIMSS)	no	0.18
18	b0074	leuA	2-isopropylmalate synthase (NCBI)	0.45	0.18
19	b2019	hisG	ATP phosphoribosyltransferase (NCBI)	0.36	0.18
20	b2599	pheA	fused chorismate mutase P/prephenate dehydratase (NCBI)	0.34	0.18

Or look for negative cofitness