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  • Top cofit genes for b1023 from Escherichia coli BW25113

    ycdR: predicted enzyme associated with biofilm formation (NCBI)
    SEED: Biofilm PGA synthesis deacetylase PgaB (EC 3.-)
    KEGG: biofilm PGA synthesis lipoprotein PgaB

    Rank Hit Name Description Conserved? Cofitness  
    1 b4494 arpB no description no 0.53
    2 b1690 ydiM predicted transporter (NCBI) no 0.52
    3 b1309 ycjM putative polysaccharide hydrolase (VIMSS) no 0.51
    4 b2109 yehB predicted outer membrane protein (NCBI) no 0.50
    5 b1734 chbF cryptic phospho-beta-glucosidase, NAD(P)-binding (NCBI) 0.32 0.49
    6 b1407 ydbD orf, hypothetical protein (VIMSS) no 0.49
    7 b1505 ydeT hypothetical protein (RefSeq) no 0.49
    8 b1579 intQ Qin prophage; predicted defective integrase (RefSeq) no 0.47
    9 b1168 b1168 putative proteases (VIMSS) 0.39 0.47
    10 b1363 trkG Rac prophage; potassium transporter subunit (NCBI) no 0.47
    11 b1409 ynbB predicted CDP-diglyceride synthase (NCBI) 0.50 0.47
    12 b1498 b1498 putative sulfatase (VIMSS) no 0.46
    13 b1773 ydjI predicted aldolase (NCBI) no 0.46
    14 b1762 b1762 orf, hypothetical protein (VIMSS) no 0.46
    15 b4346 mcrB component of McrBC 5-methylcytosine restriction system (VIMSS) no 0.45
    16 b1024 ycdS predicted outer membrane protein (NCBI) 0.98 0.45
    17 b4590 ybfK hypothetical protein (RefSeq) no 0.45
    18 b1001 yccE hypothetical protein (NCBI) no 0.44
    19 b1497 b1497 putative enzyme (VIMSS) no 0.44
    20 b1351 racC Rac prophage; predicted protein (NCBI) no 0.44

    Or look for negative cofitness