Top cofit genes for b0960 from Escherichia coli BW25113

b0960: orf, hypothetical protein (VIMSS)
SEED: Putative efflux (PET) family inner membrane protein YccS

Rank	Hit	Name	Description	Conserved?	Cofitness
1	b0961	yccF	conserved inner membrane protein (NCBI)	0.49	0.40
2	b3455	livG	leucine/isoleucine/valine transporter subunit (NCBI)	0.56	0.34
3	b3460	livJ	leucine/isoleucine/valine transporter subunit (NCBI)	0.44	0.34
4	b3454	livF	ATP-binding component of leucine transport (VIMSS)	0.45	0.32
5	b3456	livM	leucine/isoleucine/valine transporter subunit (NCBI)	0.48	0.31
6	b3523	yhjE	predicted transporter (NCBI)	0.68	0.30
7	b3458	livK	leucine transporter subunit (NCBI)	0.68	0.29
8	b3457	livH	leucine/isoleucine/valine transporter subunit (NCBI)	0.49	0.29
9	b0955	ycbZ	predicted peptidase (NCBI)	no	0.26
10	b1629	rsxC	electron transport complex protein RnfC (NCBI)	no	0.25
11	b0948	ycbY	predicted methyltransferase (NCBI)	0.39	0.25
12	b1632	rsxE	NADH-ubiquinone oxidoreductase (NCBI)	0.35	0.24
13	b3293	yhdN	hypothetical protein (NCBI)	no	0.24
14	b4053	alr	alanine racemase (NCBI)	no	0.23
15	b2158	yeiH	conserved inner membrane protein (NCBI)	0.38	0.23
16	b1095	fabF	3-oxoacyl-(acyl carrier protein) synthase (NCBI)	no	0.22
17	b1630	rsxD	electron transport complex protein RnfD (NCBI)	0.27	0.22
18	b3612	gpmI	phosphoglyceromutase (NCBI)	no	0.22
19	b0949	uup	fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI)	0.56	0.21
20	b3891	fdhE	formate dehydrogenase accessory protein FdhE (NCBI)	no	0.21

Or look for negative cofitness