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  • Top cofit genes for b0859 from Escherichia coli BW25113

    rumB: 23S rRNA m(5)U747-methyltransferase (NCBI)
    SEED: 23S rRNA (Uracil-5-) -methyltransferase rumB (EC 2.1.1.-)
    KEGG: RNA methyltransferase, TrmA family

    Rank Hit Name Description Conserved? Cofitness  
    1 b4022 yjbC 23S rRNA pseudouridine synthase (NCBI) no 0.44
    2 b2806 ygdE predicted methyltransferase (NCBI) no 0.43
    3 b1085 b1085 orf, hypothetical protein (VIMSS) no 0.40
    4 b3753 rbsR DNA-binding transcriptional repressor of ribose metabolism (NCBI) 0.45 0.39
    5 b4049 dusA tRNA-dihydrouridine synthase A (RefSeq) 0.60 0.38
    6 b3740 gidB glucose-inhibited division protein B (NCBI) 0.33 0.38
    7 b3929 rraA ribonuclease activity regulator protein RraA (NCBI) no 0.36
    8 b2576 srmB ATP-dependent RNA helicase (NCBI) no 0.34
    9 b3686 ibpB heat shock chaperone (NCBI) no 0.34
    10 b2535 csiE orf, hypothetical protein (VIMSS) no 0.33
    11 b1128 ycfD orf, hypothetical protein (VIMSS) 0.38 0.33
    12 b2317 dedA conserved inner membrane protein (NCBI) 0.39 0.33
    13 b3197 kdsD D-arabinose 5-phosphate isomerase (NCBI) no 0.33
    14 b1725 yniA predicted phosphotransferase/kinase (NCBI) 0.20 0.32
    15 b3229 sspA stringent starvation protein A (NCBI) no 0.32
    16 b2474 ypfI predicted hydrolase (NCBI) 0.53 0.32
    17 b3644 yicC hypothetical protein (NCBI) 0.44 0.32
    18 b4172 hfq RNA-binding protein Hfq (NCBI) no 0.31
    19 b2464 talA transaldolase A (NCBI) no 0.31
    20 b4371 rsmC 16S ribosomal RNA m2G1207 methyltransferase (NCBI) 0.61 0.31

    Or look for negative cofitness