Top cofit genes for b0460 from Escherichia coli BW25113

hha: modulator of gene expression, with H-NS (NCBI)
SEED: Haemolysin expression modulating protein
KEGG: haemolysin expression modulating protein

Rank	Hit	Name	Description	Conserved?	Cofitness
1	b1232	purU	formyltetrahydrofolate deformylase (NCBI)	no	0.37
2	b0440	hupB	HU, DNA-binding transcriptional regulator, beta subunit (NCBI)	0.51	0.35
3	b4313	fimE	tyrosine recombinase/inversion of on/off regulator of fimA (NCBI)	no	0.33
4	b4383	deoB	phosphopentomutase (NCBI)	0.94	0.33
5	b3385	gph	phosphoglycolate phosphatase (NCBI)	no	0.33
6	b0080	fruR	DNA-binding transcriptional dual regulator (NCBI)	0.49	0.32
7	b2351	yfdH	CPS-53 (KpLE1) prophage; bactoprenol glucosyl transferase (NCBI)	no	0.32
8	b1643	ydhI	predicted inner membrane protein (NCBI)	no	0.31
9	b4013	metA	homoserine O-succinyltransferase (NCBI)	no	0.31
10	b3368	cysG	fused siroheme synthase 1,3-dimethyluroporphyriongen III dehydrogenase and siroheme ferrochelatase/uroporphyrinogen methyltransferase (NCBI)	no	0.31
11	b1285	gmr	modulator of Rnase II stability (NCBI)	no	0.31
12	b3773	ilvY	DNA-binding transcriptional dual regulator (NCBI)	no	0.30
13	b3726	pstA	phosphate transporter subunit (NCBI)	no	0.30
14	b2290	yfbQ	aspartate aminotransferase (NCBI)	0.32	0.29
15	b2414	cysK	cysteine synthase A, O-acetylserine sulfhydrolase A subunit (NCBI)	no	0.29
16	b0724	sdhB	succinate dehydrogenase, FeS subunit (NCBI)	no	0.29
17	b3772	ilvA	threonine dehydratase (NCBI)	no	0.29
18	b2764	cysJ	sulfite reductase, alpha subunit, flavoprotein (NCBI)	no	0.29
19	b2763	cysI	sulfite reductase, beta subunit, NAD(P)-binding, heme-binding (NCBI)	no	0.29
20	b3939	metB	cystathionine gamma-synthase (NCBI)	no	0.29

Or look for negative cofitness