Top cofit genes for b0281 from Escherichia coli BW25113

intF: CP4-6 prophage; predicted phage integrase (NCBI)
SEED: CP4-6 prophage; predicted phage integrase

Rank	Hit	Name	Description	Conserved?	Cofitness
1	b0277	yagK	CP4-6 prophage; conserved protein (NCBI)	no	0.23
2	b2270	yfbK	hypothetical protein (NCBI)	no	0.22
3	b2071	yegJ	hypothetical protein (NCBI)	no	0.21
4	b3491	yhiM	conserved inner membrane protein (RefSeq)	no	0.21
5	b2601	aroF	3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tyrosine-repressible (NCBI)	no	0.21
6	b1158	pin	e14 prophage; site-specific DNA recombinase (NCBI)	no	0.21
7	b2329	aroC	chorismate synthase (NCBI)	no	0.20
8	b1310	ycjN	predicted sugar transporter subunit: periplasmic-binding component of ABC superfamily (NCBI)	no	0.19
9	b1799	yeaT	putative transcriptional regulator LYSR-type (VIMSS)	no	0.19
10	b2647	ypjA	putative ATP-binding component of a transport system (VIMSS)	no	0.19
11	b4031	xylE	D-xylose transporter (NCBI)	no	0.19
12	b2188	yejM	predicted hydrolase, inner membrane (NCBI)	no	0.19
13	b2009	sbmC	DNA gyrase inhibitor (NCBI)	no	0.19
14	b0908	aroA	3-phosphoshikimate 1-carboxyvinyltransferase (NCBI)	no	0.19
15	b2220	atoC	fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein (NCBI)	no	0.18
16	b4308	yjhR	KpLE2 phage-like element; predicted frameshift suppressor (NCBI)	no	0.18
17	b2913	serA	D-3-phosphoglycerate dehydrogenase (NCBI)	no	0.18
18	b1644	b1644	putative membrane protein (VIMSS)	no	0.18
19	b2683	ygaH	predicted inner membrane protein (NCBI)	no	0.18
20	b1664	ydhQ	hypothetical protein (NCBI)	no	0.18

Or look for negative cofitness