Top cofit genes for b0248 from Escherichia coli BW25113

yafX: CP4-6 prophage; predicted protein (NCBI)
SEED: Antirestriction protein klcA

Rank	Hit	Name	Description	Conserved?	Cofitness
1	b4195	ulaC	L-ascorbate-specific enzyme IIA component of PTS (NCBI)	no	0.21
2	b3887	dtd	D-tyrosyl-tRNA deacylase (NCBI)	no	0.20
3	b2292	yfbS	predicted transporter (NCBI)	no	0.19
4	b2716	ascB	cryptic 6-phospho-beta-glucosidase (NCBI)	no	0.19
5	b1387	maoC	fused aldehyde dehydrogenase/enoyl-CoA hydratase (NCBI)	no	0.19
6	b3125	garR	tartronate semialdehyde reductase (RefSeq)	no	0.19
7	b4416	rybA	unknown RNA (NCBI)	no	0.19
8	b2794	yqcD	hypothetical protein (NCBI)	no	0.18
9	b4685	yrbN	expressed protein (RefSeq)	no	0.18
10	b0821	ybiU	hypothetical protein (NCBI)	no	0.18
11	b0577	ybdG	predicted mechanosensitive channel (NCBI)	no	0.18
12	b0995	torR	DNA-binding response regulator in two-component regulatory system with TorS (NCBI)	no	0.18
13	b2000	flu	CP4-44 prophage; antigen 43 (Ag43) phase-variable biofilm formation autotransporter (NCBI)	no	0.18
14	b2444	yffM	CPZ-55 prophage; predicted protein (NCBI)	no	0.17
15	b2439	eutL	predicted carboxysome structural protein with predicted role in ethanolamine utilization (NCBI)	no	0.17
16	b2066	udk	uridine/cytidine kinase (VIMSS)	no	0.16
17	b2429	murP	N-acetylmuramic acid phosphotransfer permease (NCBI)	no	0.16
18	b2060	b2060	orf, hypothetical protein (VIMSS)	no	0.16
19	b0731	mngA	fused 2-O-a-mannosyl-D-glycerate specific PTS enzymes: IIA component/IIB component/IIC component (NCBI)	no	0.16
20	b0472	recR	recombination protein RecR (NCBI)	no	0.16

Or look for negative cofitness