Top cofit genes for b0227 from Escherichia coli BW25113

yafL: predicted lipoprotein and C40 family peptidase (NCBI)
SEED: Hypothetical lipoprotein yafL precursor

Rank	Hit	Name	Description	Conserved?	Cofitness
1	b1560	ydfU	Qin prophage; predicted protein (RefSeq)	0.76	0.28
2	b1311	ycjO	predicted sugar transporter subunit: membrane component of ABC superfamily (NCBI)	no	0.28
3	b4319	fimG	minor component of type 1 fimbriae (NCBI)	0.36	0.26
4	b1796	yoaG	hypothetical protein (NCBI)	no	0.25
5	b0292	yagY	hypothetical protein (NCBI)	0.25	0.24
6	b2224	atoB	acetyl-CoA acetyltransferase (NCBI)	no	0.24
7	b2627	yfjK	CP4-57 prophage; conserved protein (NCBI)	no	0.24
8	b2069	yegD	putative heat shock protein (VIMSS)	no	0.24
9	b1562	hokD	Qin prophage; small toxic polypeptide (NCBI)	no	0.22
10	b4394	yjjX	orf, hypothetical protein (VIMSS)	no	0.22
11	b0069	sgrR	DNA-binding transcriptional regulator (NCBI)	no	0.22
12	b0193	yaeF	orf, hypothetical protein (VIMSS)	no	0.22
13	b4551	yheV	hypothetical protein (NCBI)	no	0.22
14	b2928	yggC	hypothetical protein (NCBI)	no	0.21
15	b0845	ybjJ	predicted transporter (NCBI)	no	0.21
16	b1516	lsrB	AI2 transporter (NCBI)	no	0.21
17	b1513	lsrA	fused AI2 transporter subunits of ABC superfamily: ATP-binding components (NCBI)	no	0.21
18	b4438	cyaR	sRNA effector of ompX mRNA instability, cAMP-induced; hfq-dependent (RefSeq)	no	0.20
19	b3898	frvX	predicted endo-1,4-beta-glucanase (NCBI)	no	0.20
20	b1035	ycdY	hypothetical protein (NCBI)	no	0.20

Or look for negative cofitness