Top cofit genes for b0139 from Escherichia coli BW25113

htrE: predicted outer membrane usher protein (NCBI)
SEED: Outer membrane usher protein HtrE

Rank	Hit	Name	Description	Conserved?	Cofitness
1	b0138	yadM	putative fimbrial-like protein (VIMSS)	no	0.59
2	b3508	yhiD	predicted Mg(2+) transport ATPase inner membrane protein (NCBI)	no	0.53
3	b3874	yihN	predicted transporter (NCBI)	no	0.52
4	b0137	yadL	predicted fimbrial-like adhesin protein (NCBI)	0.34	0.51
5	b0833	yliE	conserved inner membrane protein (NCBI)	no	0.49
6	b3511	hdeD	acid-resistance membrane protein (NCBI)	no	0.48
7	b0135	yadC	predicted fimbrial-like adhesin protein (NCBI)	no	0.47
8	b4580	yaiT	no description	no	0.46
9	b2368	emrK	EmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component (NCBI)	no	0.45
10	b0141	yadN	predicted fimbrial-like adhesin protein (NCBI)	no	0.45
11	b3873	yihM	predicted sugar phosphate isomerase (NCBI)	0.69	0.44
12	b2370	evgS	hybrid sensory histidine kinase in two-component regulatory system with EvgA (NCBI)	0.65	0.44
13	b4452	gadY	unknown RNA (NCBI)	no	0.44
14	b0511	ybbW	putative transport protein (VIMSS)	no	0.44
15	b4156	yjeM	putative transport (VIMSS)	no	0.44
16	b3214	gltF	periplasmic protein (NCBI)	no	0.44
17	b3509	hdeB	orf, hypothetical protein (VIMSS)	0.20	0.44
18	b2109	yehB	predicted outer membrane protein (NCBI)	no	0.44
19	b3510	hdeA	acid-resistance protein, possible chaperone , subunit of HdeA dimer, inactive form of acid-resistance protein (Katherine Huang)	no	0.43
20	b2761	ygcB	conserved protein, member of DEAD box family (NCBI)	no	0.42

Or look for negative cofitness