Top cofit genes for b0088 from Escherichia coli BW25113

murD: UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase (NCBI)
SEED: UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC 6.3.2.9)
KEGG: UDP-N-acetylmuramoylalanine--D-glutamate ligase

Rank	Hit	Name	Description	Conserved?	Cofitness
1	b0741	pal	peptidoglycan-associated outer membrane lipoprotein (NCBI)	no	0.40
2	b0740	tolB	translocation protein TolB precursor (NCBI)	no	0.39
3	b3388	damX	hypothetical protein (NCBI)	no	0.38
4	b0737	tolQ	membrane spanning protein in TolA-TolQ-TolR complex (NCBI)	no	0.38
5	b0092	ddlB	D-alanylalanine synthetase (NCBI)	no	0.38
6	b0739	tolA	cell envelope integrity inner membrane protein TolA (NCBI)	no	0.37
7	b0738	tolR	membrane spanning protein in TolA-TolQ-TolR complex (NCBI)	no	0.37
8	b3839	tatC	TatABCE protein translocation system subunit (NCBI)	no	0.33
9	b1192	ldcA	L,D-carboxypeptidase A (NCBI)	no	0.32
10	b4481	rffT	4-alpha-L-fucosyltransferase (NCBI)	no	0.32
11	b3791	rffA	TDP-4-oxo-6-deoxy-D-glucose transaminase (NCBI)	no	0.32
12	b3613	yibP	putative membrane protein (VIMSS)	no	0.31
13	b3838	tatB	sec-independent translocase (NCBI)	no	0.31
14	b2318	truA	tRNA pseudouridine synthase A (NCBI)	no	0.31
15	b1677	lpp	murein lipoprotein (NCBI)	no	0.30
16	b2501	ppk	polyphosphate kinase (NCBI)	no	0.30
17	b0912	ihfB	integration host factor subunit beta (NCBI)	no	0.29
18	b0439	lon	DNA-binding ATP-dependent protease La (NCBI)	no	0.29
19	b1863	ruvC	Holliday junction resolvase (NCBI)	no	0.29
20	b0633	rlpA	minor lipoprotein (NCBI)	no	0.29

Or look for negative cofitness