Top cofit genes for b4058 from Escherichia coli BW25113

uvrA: excinuclease ABC subunit A (NCBI)
SEED: Excinuclease ABC subunit A
KEGG: excinuclease ABC subunit A



About this page:
  • Show the genes with the most similar fitness patterns as this gene.
  • To get to this page, search for any gene and click on the "Cofit" tab.
  • To view a scatterplot of the fitness patterns, click on a cofitness value.
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  • For more about cofitness, see the help page.
Rank Hit Name Description Conserved? Cofitness  
1 b0779 uvrB excinuclease ABC subunit B (NCBI) 0.99 0.93
2 b1913 uvrC excinuclease ABC, subunit C; repair of UV damage to DNA (VIMSS) 0.99 0.84
3 b3700 recF recombination protein F (NCBI) 0.90 0.78
4 b0472 recR recombination protein RecR (NCBI) 0.94 0.76
5 b2565 recO DNA repair protein RecO (NCBI) 0.95 0.75
6 b3813 uvrD DNA-dependent ATPase I and helicase II (NCBI) 0.95 0.63
7 b1184 umuC DNA polymerase V subunit UmuC (NCBI) 0.61 0.46
8 b3660 yicL predicted inner membrane protein (NCBI) 0.62 0.46
9 b4389 radA predicted repair protein (NCBI) 0.94 0.45
10 b1114 mfd transcription-repair coupling factor (NCBI) 0.96 0.45
11 b0060 polB DNA polymerase II (NCBI) 0.85 0.42
12 b2184 yejH DNA damage response helicase (yejH or radD) (from data) 0.77 0.41
13 b0448 mdlA fused predicted multidrug transporter subunits of ABC superfamily: ATP-binding components (NCBI) no 0.40
14 b2892 recJ ssDNA exonuclease, 5' --> 3'-specific (NCBI) 0.82 0.39
15 b0449 mdlB fused predicted multidrug transporter subunits of ABC superfamily: ATP-binding components (NCBI) 0.66 0.39
16 b2616 recN recombination and repair protein (NCBI) 0.92 0.39
17 b3822 recQ ATP-dependent DNA helicase (NCBI) 0.80 0.37
18 b0577 ybdG predicted mechanosensitive channel (NCBI) no 0.37
19 b3651 trmH tRNA (Guanosine-2'-O-)-methyltransferase (NCBI) no 0.37
20 b3253 yhdH predicted oxidoreductase, Zn-dependent and NAD(P)-binding (NCBI) no 0.33

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