Comparative Fitness Browser

Click on the arrows to add neighboring genes, or add a gene by its identifier, or choose a genome to add orthologs from. (Only genomes in the Fitness Browser are included.) Then, select which fitness experiments to show.

Xanthobacter sp. DMC5 Experiments:   ↔⨯

← → → ←

Add genes by locus tags or find orthologs in Choose a genome: Acidovorax sp. GW101-3H11 Acinetobacter baumannii LAC-4 Acinetobacter radioresistens SK82 Agrobacterium fabrum C58 Alteromonas macleodii MIT1002 Azospirillum brasilense Sp245 Azospirillum sp. SherDot2 Bacteroides ovatus ATCC 8483 Bacteroides stercoris CC31F Bacteroides thetaiotaomicron VPI-5482 Bifidobacterium breve UCC2003 Bosea sp. OAE506 Brevundimonas sp. GW460-12-10-14-LB2 Burkholderia phytofirmans PsJN Castellaniella sp019104865 MT123 Caulobacter crescentus NA1000 Caulobacter crescentus NA1000 Δfur Cellulophaga baltica 18 Cupriavidus basilensis FW507-4G11 Dechlorosoma suillum PS Desulfovibrio vulgaris Hildenborough JW710 Desulfovibrio vulgaris Miyazaki F Dickeya dadantii 3937 Dickeya dianthicola 67-19 Dickeya dianthicola ME23 Dinoroseobacter shibae DFL-12 Dyella japonica UNC79MFTsu3.2 Echinicola vietnamensis KMM 6221, DSM 17526 Enterobacter asburiae PDN3 Enterobacter sp. TBS_079 Erwinia amylovora T8 Erwinia tracheiphila HP pepo 2.2 Erwinia tracheiphila SCR3 Escherichia coli BL21 Escherichia coli BW25113 Escherichia coli ECOR27 Escherichia coli ECOR38 Escherichia coli ECRC100 Escherichia coli ECRC101 Escherichia coli ECRC102 Escherichia coli ECRC62 Escherichia coli ECRC98 Escherichia coli ECRC99 Escherichia coli HS(pFamp)R (ATCC 700891) Escherichia coli Nissle 1917 Escherichia fergusonii Becca Fusobacterium nucleatum SB010 Herbaspirillum seropedicae SmR1 Hydrogenophaga sp. GW460-11-11-14-LB1 Kangiella aquimarina DSM 16071 Klebsiella michiganensis M5al Klebsiella pneumoniae MKP103 Lysobacter sp. OAE881 Magnetospirillum magneticum AMB-1 Marinobacter adhaerens HP15 Methanococcus maripaludis JJ Methanococcus maripaludis S2 Methylophilus sp. DMC18 Mucilaginibacter yixingensis YX-36 DSM 26809 Mycobacterium tuberculosis H37Rv Pantoea agglomerans CFBP13505 P0401 Pantoea sp. MT58 Parabacteroides merdae CL09T00C40 Paraburkholderia bryophila 376MFSha3.1 Paraburkholderia graminis OAS925 Paraburkholderia sabiae LMG 24235 Pectobacterium carotovorum WPP14 Pedobacter sp. GW460-11-11-14-LB5 Phaeobacter inhibens DSM 17395 Phocaeicola dorei CL03T12C01 Phocaeicola vulgatus CL09T03C04 Pontibacter actiniarum KMM 6156, DSM 19842 Pseudomonas aeruginosa MRSN321 Pseudomonas aeruginosa PA14 Pseudomonas aeruginosa PUPa3 Pseudomonas fluorescens FW300-N1B4 Pseudomonas fluorescens FW300-N2C3 Pseudomonas fluorescens FW300-N2E2 Pseudomonas fluorescens FW300-N2E3 Pseudomonas fluorescens GW456-L13 Pseudomonas fluorescens SBW25 Pseudomonas fluorescens SBW25-INTG Pseudomonas lactucae CFBP13502 Pseudomonas orientalis W4I3 Pseudomonas putida KT2440 Pseudomonas segetis P6 Pseudomonas simiae WCS417 Pseudomonas sp. BP01 Pseudomonas sp. DMC3 Pseudomonas sp. RS175 Pseudomonas sp. S08-1 Pseudomonas sp. SVBP6 Pseudomonas stutzeri RCH2 Pseudomonas syringae pv. syringae B728a Pseudomonas syringae pv. syringae B728a ΔmexB Rahnella sp. WP5 Ralstonia solanacearum GMI1000 Ralstonia solanacearum IBSBF1503 Ralstonia solanacearum PSI07 Ralstonia solanacearum UW163 Ralstonia sp. UNC404CL21Col Rhizobium sp. OAE497 Rhodanobacter denitrificans FW104-10B01 Rhodanobacter denitrificans MT42 Rhodanobacter sp. FW510-T8 Rhodanobacter sp000427505 FW510-R12 Rhodopseudomonas palustris CGA009 Rhodospirillum rubrum S1H Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 Serratia liquefaciens MT49 Shewanella amazonensis SB2B Shewanella loihica PV-4 Shewanella oneidensis MR-1 Shewanella sp. ANA-3 Sinorhizobium meliloti 1021 Sphingobium sp. HT1-2 Sphingomonas koreensis DSMZ 15582 Synechococcus elongatus PCC 7942 Synechocystis sp000284455 PCC 6803 Variovorax sp. OAS795 Variovorax sp. SCN45 Vibrio cholerae E7946 ATCC 55056 Xanthomonas campestris pv. campestris strain 8004

Orthologs are searched against 1 anchor genes from Xanthobacter sp. DMC5. Or reset anchor genes to the 1 genes in the top track.

Color by: ortholog blast none   %Identity (for blast):   Rotate colors: 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17  

View

 

TinyURL