Experiment: Norland
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DDA3937_RS13750 and DDA3937_RS22335 are separated by 545 nucleotides
DDA3937_RS13750: DDA3937_RS13750 - hypothetical protein, at 3,129,435 to 3,130,361
_RS13750
DDA3937_RS22335: DDA3937_RS22335 - SMI1/KNR4 family protein, at 3,130,907 to 3,131,407
_RS22335
Position (kb)
3129
3130
3131 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3128.637 kb on - strand at 3128.798 kb on + strand at 3128.799 kb on - strand at 3128.832 kb on + strand at 3128.833 kb on - strand at 3128.833 kb on - strand at 3128.918 kb on + strand at 3128.918 kb on + strand at 3128.964 kb on - strand at 3128.964 kb on - strand at 3128.994 kb on + strand at 3128.995 kb on - strand at 3129.022 kb on + strand at 3129.048 kb on + strand at 3129.171 kb on + strand at 3129.197 kb on - strand at 3129.316 kb on - strand at 3129.595 kb on - strand, within DDA3937_RS13750 at 3129.989 kb on + strand, within DDA3937_RS13750 at 3130.026 kb on + strand, within DDA3937_RS13750 at 3130.091 kb on + strand, within DDA3937_RS13750 at 3130.092 kb on - strand, within DDA3937_RS13750 at 3130.181 kb on - strand, within DDA3937_RS13750 at 3130.202 kb on + strand, within DDA3937_RS13750 at 3130.203 kb on - strand, within DDA3937_RS13750 at 3130.214 kb on + strand, within DDA3937_RS13750 at 3130.214 kb on + strand, within DDA3937_RS13750 at 3130.214 kb on + strand, within DDA3937_RS13750 at 3130.215 kb on - strand, within DDA3937_RS13750 at 3130.237 kb on - strand, within DDA3937_RS13750 at 3130.239 kb on - strand, within DDA3937_RS13750 at 3130.280 kb on + strand at 3130.359 kb on + strand at 3130.359 kb on + strand at 3130.360 kb on - strand at 3130.360 kb on - strand at 3130.362 kb on + strand at 3130.363 kb on - strand at 3130.368 kb on + strand at 3130.380 kb on + strand at 3130.380 kb on + strand at 3130.435 kb on + strand at 3130.439 kb on + strand at 3130.440 kb on - strand at 3130.440 kb on - strand at 3130.440 kb on - strand at 3130.440 kb on - strand at 3130.587 kb on - strand at 3130.735 kb on + strand at 3130.800 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Norland remove 3,128,637 - -0.5 3,128,798 + +1.2 3,128,799 - +0.3 3,128,832 + -0.4 3,128,833 - +0.8 3,128,833 - -0.4 3,128,918 + -0.1 3,128,918 + +0.2 3,128,964 - +0.8 3,128,964 - -3.1 3,128,994 + -2.3 3,128,995 - -0.1 3,129,022 + -0.2 3,129,048 + -1.1 3,129,171 + -0.9 3,129,197 - -1.0 3,129,316 - -0.9 3,129,595 - DDA3937_RS13750 0.17 +0.5 3,129,989 + DDA3937_RS13750 0.60 +2.2 3,130,026 + DDA3937_RS13750 0.64 -0.5 3,130,091 + DDA3937_RS13750 0.71 -0.0 3,130,092 - DDA3937_RS13750 0.71 +0.8 3,130,181 - DDA3937_RS13750 0.80 -0.1 3,130,202 + DDA3937_RS13750 0.83 +1.1 3,130,203 - DDA3937_RS13750 0.83 -0.3 3,130,214 + DDA3937_RS13750 0.84 -1.4 3,130,214 + DDA3937_RS13750 0.84 +0.9 3,130,214 + DDA3937_RS13750 0.84 +0.0 3,130,215 - DDA3937_RS13750 0.84 +2.3 3,130,237 - DDA3937_RS13750 0.87 -0.8 3,130,239 - DDA3937_RS13750 0.87 -0.1 3,130,280 + -0.5 3,130,359 + -0.9 3,130,359 + -0.4 3,130,360 - +1.2 3,130,360 - +2.2 3,130,362 + -1.1 3,130,363 - +0.2 3,130,368 + -0.5 3,130,380 + +2.4 3,130,380 + +0.7 3,130,435 + -2.2 3,130,439 + -0.8 3,130,440 - -0.7 3,130,440 - +0.6 3,130,440 - +0.7 3,130,440 - -0.6 3,130,587 - +1.1 3,130,735 + -0.7 3,130,800 + -1.3
Or see this region's nucleotide sequence