Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS13750

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS13750 and DDA3937_RS22335 are separated by 545 nucleotides DDA3937_RS13750: DDA3937_RS13750 - hypothetical protein, at 3,129,435 to 3,130,361 _RS13750 DDA3937_RS22335: DDA3937_RS22335 - SMI1/KNR4 family protein, at 3,130,907 to 3,131,407 _RS22335 Position (kb) 3129 3130 3131Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3128.637 kb on - strandat 3128.798 kb on + strandat 3128.799 kb on - strandat 3128.832 kb on + strandat 3128.833 kb on - strandat 3128.833 kb on - strandat 3128.918 kb on + strandat 3128.918 kb on + strandat 3128.964 kb on - strandat 3128.964 kb on - strandat 3128.994 kb on + strandat 3128.995 kb on - strandat 3129.022 kb on + strandat 3129.048 kb on + strandat 3129.171 kb on + strandat 3129.197 kb on - strandat 3129.316 kb on - strandat 3129.595 kb on - strand, within DDA3937_RS13750at 3129.989 kb on + strand, within DDA3937_RS13750at 3130.026 kb on + strand, within DDA3937_RS13750at 3130.091 kb on + strand, within DDA3937_RS13750at 3130.092 kb on - strand, within DDA3937_RS13750at 3130.181 kb on - strand, within DDA3937_RS13750at 3130.202 kb on + strand, within DDA3937_RS13750at 3130.203 kb on - strand, within DDA3937_RS13750at 3130.214 kb on + strand, within DDA3937_RS13750at 3130.214 kb on + strand, within DDA3937_RS13750at 3130.214 kb on + strand, within DDA3937_RS13750at 3130.215 kb on - strand, within DDA3937_RS13750at 3130.237 kb on - strand, within DDA3937_RS13750at 3130.239 kb on - strand, within DDA3937_RS13750at 3130.280 kb on + strandat 3130.359 kb on + strandat 3130.359 kb on + strandat 3130.360 kb on - strandat 3130.360 kb on - strandat 3130.362 kb on + strandat 3130.363 kb on - strandat 3130.368 kb on + strandat 3130.380 kb on + strandat 3130.380 kb on + strandat 3130.435 kb on + strandat 3130.439 kb on + strandat 3130.440 kb on - strandat 3130.440 kb on - strandat 3130.440 kb on - strandat 3130.440 kb on - strandat 3130.587 kb on - strandat 3130.735 kb on + strandat 3130.800 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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3,128,637 - -0.5
3,128,798 + +1.2
3,128,799 - +0.3
3,128,832 + -0.4
3,128,833 - +0.8
3,128,833 - -0.4
3,128,918 + -0.1
3,128,918 + +0.2
3,128,964 - +0.8
3,128,964 - -3.1
3,128,994 + -2.3
3,128,995 - -0.1
3,129,022 + -0.2
3,129,048 + -1.1
3,129,171 + -0.9
3,129,197 - -1.0
3,129,316 - -0.9
3,129,595 - DDA3937_RS13750 0.17 +0.5
3,129,989 + DDA3937_RS13750 0.60 +2.2
3,130,026 + DDA3937_RS13750 0.64 -0.5
3,130,091 + DDA3937_RS13750 0.71 -0.0
3,130,092 - DDA3937_RS13750 0.71 +0.8
3,130,181 - DDA3937_RS13750 0.80 -0.1
3,130,202 + DDA3937_RS13750 0.83 +1.1
3,130,203 - DDA3937_RS13750 0.83 -0.3
3,130,214 + DDA3937_RS13750 0.84 -1.4
3,130,214 + DDA3937_RS13750 0.84 +0.9
3,130,214 + DDA3937_RS13750 0.84 +0.0
3,130,215 - DDA3937_RS13750 0.84 +2.3
3,130,237 - DDA3937_RS13750 0.87 -0.8
3,130,239 - DDA3937_RS13750 0.87 -0.1
3,130,280 + -0.5
3,130,359 + -0.9
3,130,359 + -0.4
3,130,360 - +1.2
3,130,360 - +2.2
3,130,362 + -1.1
3,130,363 - +0.2
3,130,368 + -0.5
3,130,380 + +2.4
3,130,380 + +0.7
3,130,435 + -2.2
3,130,439 + -0.8
3,130,440 - -0.7
3,130,440 - +0.6
3,130,440 - +0.7
3,130,440 - -0.6
3,130,587 - +1.1
3,130,735 + -0.7
3,130,800 + -1.3

Or see this region's nucleotide sequence