Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS10695

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
2,406,259	-				-1.2
2,406,273	+		DDA3937_RS10685	0.14	-1.4
2,406,273	+				+1.6
2,406,273	+		DDA3937_RS10685	0.14	-0.3
2,406,273	+		DDA3937_RS10685	0.14	-0.3
2,406,273	+		DDA3937_RS10685	0.14	+0.0
2,406,274	-				+1.0
2,406,274	-		DDA3937_RS10685	0.15	+0.2
2,406,274	-		DDA3937_RS10685	0.15	-1.7
2,406,274	-		DDA3937_RS10685	0.15	+1.7
2,406,274	-		DDA3937_RS10685	0.15	+0.0
2,406,274	-		DDA3937_RS10685	0.15	-0.8
2,406,274	-		DDA3937_RS10685	0.15	-0.7
2,406,274	-		DDA3937_RS10685	0.15	+0.5
2,406,274	-		DDA3937_RS10685	0.15	-0.0
2,406,275	-		DDA3937_RS10685	0.15	-0.7
2,406,300	-		DDA3937_RS10685	0.24	+1.4
2,406,300	-		DDA3937_RS10685	0.24	-0.5
2,406,300	-		DDA3937_RS10685	0.24	-0.8
2,406,379	-		DDA3937_RS10685	0.51	-0.4
2,406,403	+		DDA3937_RS10685	0.59	-0.9
2,406,477	+		DDA3937_RS10685	0.85	+1.4
2,406,478	-		DDA3937_RS10685	0.85	-1.1
2,406,478	-		DDA3937_RS10685	0.85	-0.1
2,406,478	-				+0.4
2,406,478	-		DDA3937_RS10685	0.85	+1.4
2,406,488	-		DDA3937_RS10685	0.89	+0.0
2,406,505	+				+1.1
2,406,506	-				-0.8
2,406,506	-				-0.4
2,406,506	-				-1.3
2,406,584	-				-1.3
2,406,584	-				-0.1
2,406,585	+				-0.6
2,406,773	+		DDA3937_RS10690	0.49	-0.6
2,406,773	+		DDA3937_RS10690	0.49	+0.7
2,406,774	-		DDA3937_RS10690	0.50	+0.3
2,406,776	+		DDA3937_RS10690	0.50	+0.2
2,406,863	+		DDA3937_RS10690	0.75	+0.6
2,406,864	-		DDA3937_RS10690	0.75	-2.0
2,406,864	-		DDA3937_RS10690	0.75	-1.0
2,406,903	-		DDA3937_RS10690	0.86	-0.6
2,406,930	+				+0.0
2,406,931	-				-0.8
2,406,931	-				-0.8
2,406,931	-				-1.0
2,406,935	+				-0.2
2,406,936	-				-1.1
2,406,981	+				-1.1
2,406,981	+				+0.2
2,406,981	+				-1.1
2,406,981	+				-2.0
2,406,982	-				-2.3
2,406,982	-				-0.9
2,406,982	-				+0.6
2,407,009	+				-0.1
2,407,018	+				-1.4
2,407,018	+				+1.0
2,407,018	+				+2.0
2,407,018	+				+0.6
2,407,019	-				-1.4
2,407,020	+				-0.3
2,407,045	-				+0.4
2,407,045	-				+0.3
2,407,046	+				-1.1
2,407,071	-				-0.6
2,407,103	+				-0.6
2,407,103	+				+2.3
2,407,103	+				+0.7
2,407,103	+				+0.8
2,407,103	+				-1.1
2,407,104	-				-0.6
2,407,104	-				+0.9
2,407,104	-				+3.6
2,407,105	+				-0.4
2,407,106	-				+0.2
2,407,106	-				-1.4
2,407,156	+				-2.4
2,407,157	-				-2.7
2,407,157	-				-1.3
2,407,178	+				+0.8
2,407,244	-				-2.1
2,407,260	+				-0.6
2,407,378	-		DDA3937_RS10695	0.20	+0.7
2,407,416	-		DDA3937_RS10695	0.25	+0.0
2,407,539	+		DDA3937_RS10695	0.41	+0.8
2,407,539	+		DDA3937_RS10695	0.41	-0.3
2,407,540	-		DDA3937_RS10695	0.41	-0.4
2,407,558	-		DDA3937_RS10695	0.44	+0.5
2,407,586	-		DDA3937_RS10695	0.48	-0.8
2,407,588	+		DDA3937_RS10695	0.48	+2.4
2,407,589	-		DDA3937_RS10695	0.48	-0.6
2,407,589	-		DDA3937_RS10695	0.48	+1.0
2,407,594	+		DDA3937_RS10695	0.49	-0.2
2,407,594	+		DDA3937_RS10695	0.49	+0.6
2,407,595	-		DDA3937_RS10695	0.49	+1.0
2,407,658	-		DDA3937_RS10695	0.57	+0.0
2,407,756	+		DDA3937_RS10695	0.70	+0.0
2,407,757	-		DDA3937_RS10695	0.70	+0.4
2,407,972	+				+0.7
2,407,973	-				-0.2
2,408,043	-				-0.4
2,408,043	-				+0.0
2,408,097	+				+0.9
2,408,097	+				+0.6
2,408,097	+				+0.6
2,408,097	+				+0.6
2,408,098	-				-2.0
2,408,098	-				-0.3
2,408,111	+				+3.6
2,408,111	+				-0.8
2,408,112	-				+0.7
2,408,112	-				-2.3
2,408,128	+				-1.3
2,408,135	-				+0.5
2,408,135	-				-1.3
2,408,228	+				+1.4
2,408,262	+				-1.3
2,408,262	+				-0.1
2,408,262	+				-1.2
2,408,263	-				-1.9
2,408,263	-				-1.6
2,408,263	-				-0.8
2,408,263	-				+0.1
2,408,264	+				+0.3
2,408,264	+				+0.2
2,408,264	+				-0.9
2,408,264	+				+1.1
2,408,265	-				-0.5
2,408,265	-				-0.0
2,408,265	-				+1.0
2,408,265	-				+0.4
2,408,279	+				-0.9
2,408,300	+				-0.6
2,408,318	+				+2.0
2,408,319	-				-0.5
2,408,328	-				-0.9
2,408,403	-				-0.0
2,408,468	-		DDA3937_RS10700	0.17	+1.1
2,408,522	-		DDA3937_RS10700	0.24	+0.7
2,408,573	-		DDA3937_RS10700	0.30	+1.4
2,408,668	+		DDA3937_RS10700	0.43	-1.2
2,408,669	-		DDA3937_RS10700	0.43	-1.6
2,408,816	+		DDA3937_RS10700	0.62	+0.6
2,408,817	-		DDA3937_RS10700	0.62	+2.6
2,408,830	-		DDA3937_RS10700	0.64	-0.6
2,408,830	-		DDA3937_RS10700	0.64	-0.2
2,408,856	+		DDA3937_RS10700	0.67	-0.3
2,408,856	+		DDA3937_RS10700	0.67	+0.1
2,408,856	+		DDA3937_RS10700	0.67	-1.3
2,408,857	-		DDA3937_RS10700	0.67	-0.2
2,408,857	-		DDA3937_RS10700	0.67	-0.1
2,408,857	-		DDA3937_RS10700	0.67	-0.8
2,408,857	-		DDA3937_RS10700	0.67	+1.0
2,408,860	+		DDA3937_RS10700	0.68	+0.1
2,408,860	+		DDA3937_RS10700	0.68	+0.7
2,408,860	+		DDA3937_RS10700	0.68	-0.0
2,408,861	-		DDA3937_RS10700	0.68	-0.1
2,408,861	-		DDA3937_RS10700	0.68	-0.8
2,408,861	-		DDA3937_RS10700	0.68	-0.2
2,408,861	-		DDA3937_RS10700	0.68	-1.9
2,408,864	+		DDA3937_RS10700	0.68	-0.8
2,408,864	+		DDA3937_RS10700	0.68	+1.0
2,408,864	+		DDA3937_RS10700	0.68	+0.4
2,408,864	+		DDA3937_RS10700	0.68	+0.5
2,408,864	+		DDA3937_RS10700	0.68	+5.2
2,408,865	-		DDA3937_RS10700	0.68	-2.0
2,408,865	-		DDA3937_RS10700	0.68	-1.1
2,408,866	+		DDA3937_RS10700	0.68	-0.2
2,408,866	+		DDA3937_RS10700	0.68	+1.4
2,408,866	+		DDA3937_RS10700	0.68	-1.9