Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS08990

Experiment: Norland

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Norland
2,025,843	+		DDA3937_RS08980	0.87	+1.1
2,025,844	-		DDA3937_RS08980	0.87	+0.2
2,026,027	-				-1.2
2,026,040	+				-0.0
2,026,040	+				-1.0
2,026,073	+				-0.1
2,026,074	-				+0.4
2,026,094	-				-0.0
2,026,113	+				+0.0
2,026,113	+				-1.0
2,026,114	-				-1.5
2,026,126	-				-0.9
2,026,177	+				+1.7
2,026,178	-				+1.8
2,026,204	+				+1.1
2,026,204	+				+0.4
2,026,205	-				+2.3
2,026,275	+				-0.3
2,026,275	+				-1.4
2,026,275	+				+0.0
2,026,300	+				-0.5
2,026,300	+				-0.2
2,026,300	+				-0.0
2,026,300	+				-0.4
2,026,300	+				-0.8
2,026,300	+				-0.6
2,026,300	+				-1.0
2,026,300	+				-1.1
2,026,300	+				-0.9
2,026,301	-				+0.4
2,026,301	-				-1.2
2,026,301	-				-1.8
2,026,301	-				+4.4
2,026,301	-				+2.3
2,026,301	-				+0.6
2,026,301	-				-0.0
2,026,301	-				-0.3
2,026,301	-				-1.8
2,026,301	-				-0.5
2,026,301	-				+0.3
2,026,301	-				+0.2
2,026,344	+				-0.7
2,026,345	-				-1.7
2,026,414	+		DDA3937_RS22780	0.20	+1.1
2,026,414	+		DDA3937_RS22780	0.20	-1.0
2,026,485	+		DDA3937_RS22780	0.39	+0.2
2,026,485	+		DDA3937_RS22780	0.39	-0.3
2,026,485	+		DDA3937_RS22780	0.39	-0.3
2,026,486	-		DDA3937_RS22780	0.39	-1.2
2,026,518	+		DDA3937_RS22780	0.47	+1.2
2,026,519	-		DDA3937_RS22780	0.48	-0.0
2,026,551	+		DDA3937_RS22780	0.56	-1.1
2,026,573	+		DDA3937_RS22780	0.62	-0.3
2,026,573	+		DDA3937_RS22780	0.62	-1.4
2,026,573	+		DDA3937_RS22780	0.62	-0.7
2,026,573	+		DDA3937_RS22780	0.62	-0.3
2,026,573	+		DDA3937_RS22780	0.62	-1.1
2,026,574	-		DDA3937_RS22780	0.62	-0.1
2,026,574	-		DDA3937_RS22780	0.62	-0.3
2,026,636	-		DDA3937_RS22780	0.78	-2.7
2,026,638	+		DDA3937_RS22780	0.79	-1.3
2,026,638	+		DDA3937_RS22780	0.79	+0.5
2,026,638	+		DDA3937_RS22780	0.79	-0.1
2,026,638	+		DDA3937_RS22780	0.79	-0.7
2,026,639	-		DDA3937_RS22780	0.79	-1.5
2,026,639	-		DDA3937_RS22780	0.79	-1.0
2,026,747	-				-1.8
2,026,756	+				+0.7
2,026,757	-				+2.7
2,026,757	-				+2.7
2,026,757	-				-1.2
2,026,780	+				+0.2
2,026,781	-				-0.0
2,026,781	-				+3.1
2,026,781	-				-1.2
2,026,781	-				+0.5
2,026,781	-				-1.5
2,026,781	-				-0.9
2,026,813	-		DDA3937_RS08990	0.12	-0.1
2,026,823	+		DDA3937_RS08990	0.14	-0.7
2,026,830	+		DDA3937_RS08990	0.16	+0.2
2,026,831	-		DDA3937_RS08990	0.16	+0.7
2,026,831	-		DDA3937_RS08990	0.16	+0.7
2,026,831	-		DDA3937_RS08990	0.16	+1.4
2,026,833	+		DDA3937_RS08990	0.16	-1.1
2,026,833	+		DDA3937_RS08990	0.16	-1.3
2,026,833	+		DDA3937_RS08990	0.16	-0.1
2,026,834	-		DDA3937_RS08990	0.17	-0.3
2,026,834	-		DDA3937_RS08990	0.17	+6.1
2,026,862	-		DDA3937_RS08990	0.23	-0.9
2,026,893	+		DDA3937_RS08990	0.30	+0.5
2,026,894	-		DDA3937_RS08990	0.31	-0.1
2,026,929	+		DDA3937_RS08990	0.39	+0.4
2,026,937	+		DDA3937_RS08990	0.41	-0.6
2,026,938	-		DDA3937_RS08990	0.41	-1.3
2,026,957	+		DDA3937_RS08990	0.45	+1.5
2,026,957	+		DDA3937_RS08990	0.45	-2.5
2,026,957	+		DDA3937_RS08990	0.45	-1.5
2,026,968	-		DDA3937_RS08990	0.48	-1.0
2,026,984	-		DDA3937_RS08990	0.51	+0.3
2,027,013	+		DDA3937_RS08990	0.58	+1.1
2,027,163	+				+0.2
2,027,168	+				+0.6
2,027,168	+				+0.8
2,027,198	-				-0.2
2,027,338	+				+0.1
2,027,342	+				-1.5
2,027,342	+				+0.2
2,027,357	-				+1.9
2,027,388	-				+1.1
2,027,388	-				-1.7
2,027,389	+				+0.0
2,027,389	+				+0.5
2,027,389	+				-1.5
2,027,390	-				+1.7
2,027,390	-				-1.1
2,027,390	-				-1.2
2,027,419	-				+0.5
2,027,421	+				+0.1
2,027,422	-				+0.8
2,027,536	-				+0.5
2,027,584	+				+0.5
2,027,585	-				+2.2
2,027,587	+				-0.9
2,027,647	+				+0.3
2,027,658	+				+0.2
2,027,659	-				-0.9
2,027,670	+		DDA3937_RS08995	0.12	+0.1
2,027,671	-		DDA3937_RS08995	0.12	+0.7
2,027,671	-		DDA3937_RS08995	0.12	-0.2
2,027,801	+		DDA3937_RS08995	0.31	-1.1
2,027,824	+		DDA3937_RS08995	0.34	-2.0
2,027,825	-		DDA3937_RS08995	0.35	-2.4
2,027,852	+		DDA3937_RS08995	0.39	-1.0
2,027,853	-		DDA3937_RS08995	0.39	-0.5
2,027,853	-		DDA3937_RS08995	0.39	-1.1
2,027,853	-		DDA3937_RS08995	0.39	-0.2
2,027,948	+		DDA3937_RS08995	0.53	+0.1
2,027,948	+		DDA3937_RS08995	0.53	-2.5
2,027,982	+		DDA3937_RS08995	0.58	-1.5
2,027,983	-		DDA3937_RS08995	0.58	+1.4
2,027,983	-		DDA3937_RS08995	0.58	-0.2
2,027,985	+		DDA3937_RS08995	0.58	+1.0
2,028,001	+		DDA3937_RS08995	0.61	-1.6
2,028,001	+		DDA3937_RS08995	0.61	-1.0
2,028,001	+		DDA3937_RS08995	0.61	+0.1
2,028,001	+				+2.4
2,028,002	-		DDA3937_RS08995	0.61	-1.1
2,028,002	-		DDA3937_RS08995	0.61	-0.9
2,028,002	-		DDA3937_RS08995	0.61	-1.5
2,028,002	-		DDA3937_RS08995	0.61	-1.1
2,028,029	+		DDA3937_RS08995	0.65	-0.1
2,028,034	+		DDA3937_RS08995	0.65	-0.5
2,028,095	+		DDA3937_RS08995	0.75	-0.5
2,028,095	+		DDA3937_RS08995	0.75	+1.3
2,028,096	-		DDA3937_RS08995	0.75	-0.8
2,028,096	-		DDA3937_RS08995	0.75	-1.1
2,028,096	-		DDA3937_RS08995	0.75	+1.4
2,028,096	-		DDA3937_RS08995	0.75	-1.7
2,028,096	-		DDA3937_RS08995	0.75	+0.7
2,028,154	-		DDA3937_RS08995	0.83	-2.0
2,028,159	+		DDA3937_RS08995	0.84	-0.8
2,028,159	+		DDA3937_RS08995	0.84	-1.9
2,028,160	-		DDA3937_RS08995	0.84	+0.0
2,028,160	-		DDA3937_RS08995	0.84	+0.4
2,028,165	+		DDA3937_RS08995	0.85	+0.1