Strain Fitness in Dickeya dadantii 3937 around DDA3937_RS03900

Experiment: Norland

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDDA3937_RS21875 and DDA3937_RS03895 are separated by 83 nucleotidesDDA3937_RS03895 and DDA3937_RS03900 are separated by 26 nucleotidesDDA3937_RS03900 and DDA3937_RS03905 are separated by 289 nucleotides DDA3937_RS21875: DDA3937_RS21875 - DUF2285 domain-containing protein, at 864,924 to 865,721 _RS21875 DDA3937_RS03895: DDA3937_RS03895 - helix-turn-helix domain-containing protein, at 865,805 to 866,101 _RS03895 DDA3937_RS03900: DDA3937_RS03900 - replication initiator protein A, at 866,128 to 866,940 _RS03900 DDA3937_RS03905: DDA3937_RS03905 - S26 family signal peptidase, at 867,230 to 867,796 _RS03905 Position (kb) 866 867Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 865.264 kb on + strand, within DDA3937_RS21875at 865.264 kb on + strand, within DDA3937_RS21875at 865.265 kb on - strand, within DDA3937_RS21875at 865.265 kb on - strand, within DDA3937_RS21875at 865.312 kb on + strand, within DDA3937_RS21875at 865.338 kb on + strand, within DDA3937_RS21875at 865.338 kb on + strand, within DDA3937_RS21875at 865.338 kb on + strand, within DDA3937_RS21875at 865.338 kb on + strand, within DDA3937_RS21875at 865.338 kb on + strandat 865.338 kb on + strand, within DDA3937_RS21875at 865.338 kb on + strand, within DDA3937_RS21875at 865.338 kb on + strand, within DDA3937_RS21875at 865.338 kb on + strand, within DDA3937_RS21875at 865.339 kb on - strand, within DDA3937_RS21875at 865.339 kb on - strand, within DDA3937_RS21875at 865.339 kb on - strand, within DDA3937_RS21875at 865.339 kb on - strand, within DDA3937_RS21875at 865.390 kb on + strand, within DDA3937_RS21875at 865.390 kb on + strand, within DDA3937_RS21875at 865.433 kb on - strand, within DDA3937_RS21875at 865.439 kb on + strand, within DDA3937_RS21875at 865.440 kb on - strand, within DDA3937_RS21875at 865.483 kb on + strand, within DDA3937_RS21875at 865.483 kb on + strand, within DDA3937_RS21875at 865.483 kb on + strand, within DDA3937_RS21875at 865.483 kb on + strand, within DDA3937_RS21875at 865.483 kb on + strand, within DDA3937_RS21875at 865.483 kb on + strand, within DDA3937_RS21875at 865.483 kb on + strand, within DDA3937_RS21875at 865.484 kb on - strand, within DDA3937_RS21875at 865.484 kb on - strand, within DDA3937_RS21875at 865.484 kb on - strand, within DDA3937_RS21875at 865.484 kb on - strand, within DDA3937_RS21875at 865.484 kb on - strand, within DDA3937_RS21875at 865.484 kb on - strand, within DDA3937_RS21875at 865.484 kb on - strand, within DDA3937_RS21875at 865.484 kb on - strand, within DDA3937_RS21875at 865.484 kb on - strand, within DDA3937_RS21875at 865.487 kb on + strand, within DDA3937_RS21875at 865.488 kb on - strand, within DDA3937_RS21875at 865.488 kb on - strand, within DDA3937_RS21875at 865.488 kb on - strand, within DDA3937_RS21875at 865.488 kb on - strand, within DDA3937_RS21875at 865.733 kb on + strandat 865.804 kb on + strandat 865.805 kb on - strandat 865.805 kb on - strandat 865.884 kb on - strand, within DDA3937_RS03895at 865.910 kb on + strand, within DDA3937_RS03895at 865.910 kb on + strand, within DDA3937_RS03895at 865.911 kb on - strand, within DDA3937_RS03895at 865.997 kb on + strand, within DDA3937_RS03895at 865.997 kb on + strand, within DDA3937_RS03895at 865.997 kb on + strand, within DDA3937_RS03895at 865.997 kb on + strand, within DDA3937_RS03895at 865.997 kb on + strand, within DDA3937_RS03895at 865.998 kb on - strand, within DDA3937_RS03895at 865.998 kb on - strand, within DDA3937_RS03895at 865.998 kb on - strand, within DDA3937_RS03895at 865.998 kb on - strand, within DDA3937_RS03895at 865.998 kb on - strand, within DDA3937_RS03895at 865.998 kb on - strand, within DDA3937_RS03895at 865.998 kb on - strand, within DDA3937_RS03895at 865.998 kb on - strand, within DDA3937_RS03895at 865.998 kb on - strand, within DDA3937_RS03895at 865.998 kb on - strand, within DDA3937_RS03895at 865.998 kb on - strand, within DDA3937_RS03895at 865.998 kb on - strand, within DDA3937_RS03895at 866.018 kb on - strand, within DDA3937_RS03895at 866.018 kb on - strand, within DDA3937_RS03895at 866.063 kb on + strand, within DDA3937_RS03895at 866.064 kb on - strand, within DDA3937_RS03895at 866.094 kb on + strandat 866.095 kb on - strandat 866.203 kb on + strandat 866.203 kb on + strandat 866.252 kb on - strand, within DDA3937_RS03900at 866.494 kb on - strand, within DDA3937_RS03900at 866.535 kb on - strand, within DDA3937_RS03900at 866.626 kb on + strand, within DDA3937_RS03900at 866.626 kb on + strand, within DDA3937_RS03900at 866.674 kb on + strand, within DDA3937_RS03900at 866.674 kb on + strand, within DDA3937_RS03900at 866.675 kb on - strand, within DDA3937_RS03900at 866.774 kb on + strand, within DDA3937_RS03900at 866.774 kb on + strand, within DDA3937_RS03900at 866.774 kb on + strand, within DDA3937_RS03900at 866.775 kb on - strand, within DDA3937_RS03900at 866.775 kb on - strand, within DDA3937_RS03900at 866.860 kb on + strandat 866.860 kb on + strandat 866.860 kb on + strandat 866.860 kb on + strandat 866.861 kb on - strandat 866.900 kb on + strandat 866.900 kb on + strandat 866.901 kb on - strandat 866.901 kb on - strandat 867.050 kb on - strandat 867.083 kb on + strandat 867.084 kb on - strandat 867.084 kb on - strandat 867.098 kb on - strandat 867.245 kb on - strandat 867.355 kb on + strand, within DDA3937_RS03905at 867.356 kb on - strand, within DDA3937_RS03905at 867.362 kb on + strand, within DDA3937_RS03905at 867.371 kb on + strandat 867.510 kb on - strand, within DDA3937_RS03905at 867.535 kb on + strand, within DDA3937_RS03905at 867.535 kb on + strand, within DDA3937_RS03905at 867.551 kb on - strand, within DDA3937_RS03905at 867.661 kb on + strand, within DDA3937_RS03905at 867.661 kb on + strand, within DDA3937_RS03905at 867.661 kb on + strand, within DDA3937_RS03905at 867.661 kb on + strand, within DDA3937_RS03905at 867.662 kb on - strand, within DDA3937_RS03905at 867.662 kb on - strand, within DDA3937_RS03905at 867.735 kb on - strand, within DDA3937_RS03905at 867.752 kb on - strandat 867.795 kb on - strandat 867.848 kb on + strandat 867.848 kb on + strandat 867.848 kb on + strandat 867.849 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Norland
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865,264 + DDA3937_RS21875 0.43 +0.8
865,264 + DDA3937_RS21875 0.43 -0.5
865,265 - DDA3937_RS21875 0.43 -0.3
865,265 - DDA3937_RS21875 0.43 -0.9
865,312 + DDA3937_RS21875 0.49 -2.0
865,338 + DDA3937_RS21875 0.52 +0.5
865,338 + DDA3937_RS21875 0.52 -0.2
865,338 + DDA3937_RS21875 0.52 +0.2
865,338 + DDA3937_RS21875 0.52 +0.7
865,338 + +2.2
865,338 + DDA3937_RS21875 0.52 +0.7
865,338 + DDA3937_RS21875 0.52 -1.8
865,338 + DDA3937_RS21875 0.52 +0.3
865,338 + DDA3937_RS21875 0.52 -0.6
865,339 - DDA3937_RS21875 0.52 -0.8
865,339 - DDA3937_RS21875 0.52 -0.3
865,339 - DDA3937_RS21875 0.52 +0.3
865,339 - DDA3937_RS21875 0.52 -2.7
865,390 + DDA3937_RS21875 0.58 +0.1
865,390 + DDA3937_RS21875 0.58 +1.1
865,433 - DDA3937_RS21875 0.64 -0.1
865,439 + DDA3937_RS21875 0.65 -0.5
865,440 - DDA3937_RS21875 0.65 +0.0
865,483 + DDA3937_RS21875 0.70 +0.6
865,483 + DDA3937_RS21875 0.70 +0.5
865,483 + DDA3937_RS21875 0.70 -0.5
865,483 + DDA3937_RS21875 0.70 -1.6
865,483 + DDA3937_RS21875 0.70 +0.9
865,483 + DDA3937_RS21875 0.70 -0.6
865,483 + DDA3937_RS21875 0.70 +2.8
865,484 - DDA3937_RS21875 0.70 -0.8
865,484 - DDA3937_RS21875 0.70 -1.3
865,484 - DDA3937_RS21875 0.70 -0.7
865,484 - DDA3937_RS21875 0.70 -1.9
865,484 - DDA3937_RS21875 0.70 +0.3
865,484 - DDA3937_RS21875 0.70 -1.3
865,484 - DDA3937_RS21875 0.70 -0.1
865,484 - DDA3937_RS21875 0.70 -1.1
865,484 - DDA3937_RS21875 0.70 -2.6
865,487 + DDA3937_RS21875 0.71 -0.7
865,488 - DDA3937_RS21875 0.71 -0.9
865,488 - DDA3937_RS21875 0.71 -0.1
865,488 - DDA3937_RS21875 0.71 +0.8
865,488 - DDA3937_RS21875 0.71 -2.2
865,733 + +0.2
865,804 + -0.9
865,805 - +1.8
865,805 - -1.0
865,884 - DDA3937_RS03895 0.27 -0.2
865,910 + DDA3937_RS03895 0.35 +0.5
865,910 + DDA3937_RS03895 0.35 -1.0
865,911 - DDA3937_RS03895 0.36 +1.0
865,997 + DDA3937_RS03895 0.65 +0.1
865,997 + DDA3937_RS03895 0.65 +1.7
865,997 + DDA3937_RS03895 0.65 -1.5
865,997 + DDA3937_RS03895 0.65 -1.5
865,997 + DDA3937_RS03895 0.65 +0.3
865,998 - DDA3937_RS03895 0.65 +0.8
865,998 - DDA3937_RS03895 0.65 -1.0
865,998 - DDA3937_RS03895 0.65 +0.3
865,998 - DDA3937_RS03895 0.65 -2.1
865,998 - DDA3937_RS03895 0.65 -1.4
865,998 - DDA3937_RS03895 0.65 +0.1
865,998 - DDA3937_RS03895 0.65 +0.1
865,998 - DDA3937_RS03895 0.65 -0.4
865,998 - DDA3937_RS03895 0.65 -2.3
865,998 - DDA3937_RS03895 0.65 -0.0
865,998 - DDA3937_RS03895 0.65 -2.5
865,998 - DDA3937_RS03895 0.65 +0.5
866,018 - DDA3937_RS03895 0.72 +0.1
866,018 - DDA3937_RS03895 0.72 -0.3
866,063 + DDA3937_RS03895 0.87 +1.0
866,064 - DDA3937_RS03895 0.87 -0.2
866,094 + -0.1
866,095 - -1.0
866,203 + -0.1
866,203 + -2.2
866,252 - DDA3937_RS03900 0.15 -1.3
866,494 - DDA3937_RS03900 0.45 -0.5
866,535 - DDA3937_RS03900 0.50 +1.3
866,626 + DDA3937_RS03900 0.61 -1.9
866,626 + DDA3937_RS03900 0.61 -0.2
866,674 + DDA3937_RS03900 0.67 -1.9
866,674 + DDA3937_RS03900 0.67 +1.7
866,675 - DDA3937_RS03900 0.67 +0.5
866,774 + DDA3937_RS03900 0.79 -0.3
866,774 + DDA3937_RS03900 0.79 +1.8
866,774 + DDA3937_RS03900 0.79 -0.5
866,775 - DDA3937_RS03900 0.80 +0.8
866,775 - DDA3937_RS03900 0.80 +0.2
866,860 + -0.9
866,860 + -0.5
866,860 + -0.6
866,860 + -0.4
866,861 - -0.7
866,900 + -1.2
866,900 + -2.1
866,901 - +1.7
866,901 - -0.3
867,050 - +1.8
867,083 + +0.1
867,084 - +1.0
867,084 - -0.3
867,098 - +1.8
867,245 - -0.3
867,355 + DDA3937_RS03905 0.22 -0.7
867,356 - DDA3937_RS03905 0.22 +1.5
867,362 + DDA3937_RS03905 0.23 -0.3
867,371 + +1.5
867,510 - DDA3937_RS03905 0.49 -1.0
867,535 + DDA3937_RS03905 0.54 -2.9
867,535 + DDA3937_RS03905 0.54 -0.9
867,551 - DDA3937_RS03905 0.57 -0.8
867,661 + DDA3937_RS03905 0.76 +0.3
867,661 + DDA3937_RS03905 0.76 -1.2
867,661 + DDA3937_RS03905 0.76 -0.1
867,661 + DDA3937_RS03905 0.76 -3.5
867,662 - DDA3937_RS03905 0.76 -1.1
867,662 - DDA3937_RS03905 0.76 +0.6
867,735 - DDA3937_RS03905 0.89 -1.4
867,752 - -1.6
867,795 - +0.2
867,848 + -0.5
867,848 + -0.6
867,848 + +0.5
867,849 - -0.9

Or see this region's nucleotide sequence